View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14111_low_20 (Length: 248)
Name: NF14111_low_20
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 14789100 - 14789200
Alignment:
| Q |
21 |
gcttgagcagaagttcacagaaatcatctcctattggaaattttcatcttgatcatgatgaccaaatttttgaagcagtcctccattgcaaaagatcaat |
120 |
Q |
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| T |
14789100 |
gcttgagcagaagttcacagaaatcatctcctattggaaattttcatcttgatcatgatgaccaaatttttgaagcagtcctccattgcaaaagatcaat |
14789199 |
T |
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| Q |
121 |
a |
121 |
Q |
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| |
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| T |
14789200 |
a |
14789200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 14789278 - 14789320
Alignment:
| Q |
199 |
gcttaattacttggaaagttgaattcattatttcttcatttca |
241 |
Q |
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| T |
14789278 |
gcttaattacttggaacgttgaattcattatttcttcatttca |
14789320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 17543447 - 17543345
Alignment:
| Q |
21 |
gcttgagcagaagttcacagaaatcatctcctattggaaattttcatcttgatcatgatgaccaaatttttgaagcagtcctccattgcaaaagatcaat |
120 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17543447 |
gcttgagcagaggttcacagaaatcatctcctattggaaattttcatcttgatcatgatgaccaaatttttgaagcagtcctccattgcaaaagatcaat |
17543348 |
T |
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| Q |
121 |
agg |
123 |
Q |
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||| |
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| T |
17543347 |
agg |
17543345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 17543258 - 17543215
Alignment:
| Q |
199 |
gcttaattacttggaaagttgaattcatta-tttcttcatttca |
241 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
17543258 |
gcttaattacttggaacgttgaattcattattttcttcatttca |
17543215 |
T |
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