View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14111_low_25 (Length: 236)
Name: NF14111_low_25
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26304590 - 26304811
Alignment:
| Q |
1 |
ttgagccgatgttgatgatgttggagtagaaaaagttgaatcaggaggcgtagtagtatcagttttgttattttgaccatcttttttacccttcttactc |
100 |
Q |
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| T |
26304590 |
ttgagccgatgttgatgatgttggagtagaaaaagttgaatcaggaggcgtagtagtatcagttttgttattttgaccatcttttttacccttcttactc |
26304689 |
T |
|
| Q |
101 |
atcaaattatgatacaaagaaggaaatgagaaactatcaagcttctcatgattcttctcactcaagcaaccttcttttccattcgctaaaagcttctctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26304690 |
atcaaattatgatacaaagaaggaaatgagaaactatcaagcttgtcatgattcttctcactcaagcaaccttcttttccattccctaaaagcttctctt |
26304789 |
T |
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| Q |
201 |
cttcaactttaaaagaagaatc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
26304790 |
cttcaactttaaaagaagaatc |
26304811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 12134033 - 12133895
Alignment:
| Q |
82 |
ttttttacccttcttactcatcaaattatgatacaaagaaggaaatgagaaactatcaagcttctcatg---attcttctcactcaagcaaccttctttt |
178 |
Q |
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||||| |||||||||| |||||||||| ||||||||||||||||||||||| | |||| ||||||||| ||| || ||| | || || || |||||| |
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| T |
12134033 |
tttttaacccttcttaatcatcaaattgcgatacaaagaaggaaatgagaaagtctcaaacttctcatgattatttttttcattgaaacatccatctttt |
12133934 |
T |
|
| Q |
179 |
ccattcgctaaaagcttctcttcttcaactttaaaagaa |
217 |
Q |
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| || |||||||||||||||||| ||||||||||||| |
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| T |
12133933 |
catgtccctaaaagcttctcttcttgaactttaaaagaa |
12133895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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