View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14111_low_31 (Length: 202)
Name: NF14111_low_31
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_low_31 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 35676536 - 35676736
Alignment:
| Q |
2 |
ttcttcactatctttccactattcctcatttctctttttgtaatcataaaatattggcataattccaacaattcttctaccaccnnnnnnnncttacctc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| |||||||| |
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| T |
35676536 |
ttcttcactatctttccactattcctcatttctctttttgccatcataaaatattggcataattccaacaattcttgtgccaccaaaaaaaacttacctc |
35676635 |
T |
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| Q |
102 |
cttcacctccaagatttcctctacttggtaacctccaccaacttggcttattccctcattgcacactccaaaatttagctcacaaatatggccctttaat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35676636 |
cttcacctccaagatttcctctacttggtaacctccaccaacttggcttattccctcattgcacactccaaaatttagctcacaaatatggccctttaat |
35676735 |
T |
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| Q |
202 |
g |
202 |
Q |
| |
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| |
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| T |
35676736 |
g |
35676736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 35646039 - 35646240
Alignment:
| Q |
1 |
tttcttcactatctttccactattcctcatttctctttttgtaatcataaaatattggcataattccaacaattcttctaccaccnnnnnnnncttacct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35646039 |
tttcttcactatctttccactattcctcatttctctttttgtaatcataaaatattggcataattccaacaattcttctaccaccaaaaaaaacttacct |
35646138 |
T |
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| Q |
101 |
ccttcacctccaagatttcctctacttggtaacctccaccaacttggcttattccctcattgcacactccaaaatttagctcacaaatatggccctttaa |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||| |||| || || ||| | |||||||||| | |||| ||||||||||||||||||||| |
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| T |
35646139 |
ccttcacctccaagaattcctctacttggtaacctccatcaatttggtttgtttccttaccgcacactccacactttatctcacaaatatggccctttaa |
35646238 |
T |
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| Q |
201 |
tg |
202 |
Q |
| |
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|| |
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| T |
35646239 |
tg |
35646240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 35641212 - 35641320
Alignment:
| Q |
94 |
cttacctccttcacctccaagatttcctctacttggtaacctccaccaacttggcttattccctcattgcacactccaaaatttagctcacaaatatggc |
193 |
Q |
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|||||| ||||||||||||||||| ||| |||||||||| ||||| ||| || ||||||||||||| | |||||||| ||||||||||||| ||||| |
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| T |
35641212 |
cttaccaccttcacctccaagattccctttacttggtaatctccatcaagttagcttattccctcacagatcactccaagatttagctcacaagtatggt |
35641311 |
T |
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| Q |
194 |
cctttaatg |
202 |
Q |
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||| ||||| |
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| T |
35641312 |
cctctaatg |
35641320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 35655548 - 35655656
Alignment:
| Q |
94 |
cttacctccttcacctccaagatttcctctacttggtaacctccaccaacttggcttattccctcattgcacactccaaaatttagctcacaaatatggc |
193 |
Q |
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|||||| ||||||||||||||||||||| |||||||||| || || ||| |||| | | |||||| | |||||||| |||||||||||||||||||| |
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| T |
35655548 |
cttaccaccttcacctccaagatttcctatacttggtaatcttcatcaaattggtgtgtcccctcacagatcactccaagatttagctcacaaatatggc |
35655647 |
T |
|
| Q |
194 |
cctttaatg |
202 |
Q |
| |
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||||||||| |
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| T |
35655648 |
cctttaatg |
35655656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 35673178 - 35673278
Alignment:
| Q |
99 |
ctccttcacctccaagatttcctctacttggtaacctccaccaacttggcttattccctcattgcacactccaaaatttagctcacaaatatggcccttt |
198 |
Q |
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|||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||| ||| | ||||| || ||| |||||||||| |||||||||| |
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| T |
35673178 |
ctccttcacctccaagatttcctctagttggcaacttccatcaacttggcttattccttcaccgtgcactctaagattcagctcacaaaaatggcccttt |
35673277 |
T |
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| Q |
199 |
a |
199 |
Q |
| |
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| T |
35673278 |
a |
35673278 |
T |
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