View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14111_low_4 (Length: 414)
Name: NF14111_low_4
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 27565494 - 27565640
Alignment:
| Q |
16 |
attctaaaacatcttgtggctctgaaaatctataagacaacaccatgtggtggtttgtgagctgttgtctctcactacagcccatcataatctataagta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27565494 |
attctaaaacatcttgtggctctgaaaatctataagacaacaccatgtggtggtttgtgagctgttgtctctcactacagcccatcataatctataagta |
27565593 |
T |
|
| Q |
116 |
ctgatgtcattcagtaaaatagtttaccttgttactgaattgttatt |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27565594 |
ctgatgtcattcagtaaaatagtttaccttgttactgaattgttatt |
27565640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 27426463 - 27426384
Alignment:
| Q |
120 |
tgtcattcagtaaaatagtttaccttgttactgaattgttattgtgcacctgtttcttatgaagggaaggtacctcatgt |
199 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
27426463 |
tgtcattcagtgaaataattgaccttgttactgaattgttattgtgcacttgttctttatgaagggaagttacctcatgt |
27426384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 27420963 - 27420925
Alignment:
| Q |
38 |
tgaaaatctataagacaacaccatgtggtggtttgtgag |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27420963 |
tgaaaatctataagacaacaccatgtggtggttagtgag |
27420925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 27416425 - 27416380
Alignment:
| Q |
47 |
ataagacaacaccatgtggtggtttgtgagctgttgtctctcacta |
92 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27416425 |
ataagacagcaccatgtggtggttcttgagctgttgtctctcacta |
27416380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 27416314 - 27416186
Alignment:
| Q |
119 |
atgtcattcagtaaaatagtttaccttgttactgaattgttattgtgcacctgtttcttatgaagggaaggtacctcatgtatgactaaggctttggtac |
218 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||| ||||||| ||||||| || ||| ||||||| |||| |||| ||||||| || ||| ||||||| || |
|
|
| T |
27416314 |
atgtcattcagtgaaataatttcccttgttgatgaattggtattgtgtacttgt---ttatgaaaggaatgtacttcatgtaagattaaagctttggcac |
27416218 |
T |
|
| Q |
219 |
-ccaacatttgaa-ttcatgtctgtattatgt |
248 |
Q |
| |
|
|||| |||| || ||||||||| |||||||| |
|
|
| T |
27416217 |
tccaaaattttaatttcatgtctatattatgt |
27416186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 27413481 - 27413449
Alignment:
| Q |
38 |
tgaaaatctataagacaacaccatgtggtggtt |
70 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
27413481 |
tgaaaatctataagacaacaccatgtgatggtt |
27413449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 27565636 - 27565668
Alignment:
| Q |
366 |
ttattatgtcgtttttagattactaaattgttt |
398 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
27565636 |
ttattatgtcgtttttagattactaagttgttt |
27565668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University