View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14111_low_6 (Length: 374)
Name: NF14111_low_6
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_low_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 374
Target Start/End: Original strand, 2814154 - 2814528
Alignment:
| Q |
15 |
tcttctctaggactggacaaaaataaaatatccggcccaaaccggccaaaccgtatggaccgaagggtgtcgggtcaggtcgaacagttgacgcgggtca |
114 |
Q |
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| T |
2814154 |
tcttcactaggactggacaaaaataaaatatccggcccaaaccggccaaactgtatggaccgaagggtgttgggtcgggtcgaacggttgatgcgggtca |
2814253 |
T |
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| Q |
115 |
atcggcacaagtgaaaatccaaacccaacggtatgctgcaccgaccgaactatacatatacatatagagcacacagctgtaataagtatctgtcagtgtc |
214 |
Q |
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| T |
2814254 |
atcggcacaagtgaaaatccagacccaacggtatgctgcaccgaccgaactatacatatacatatggagcacacagctgtaataagtatctgtcagtgtc |
2814353 |
T |
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| Q |
215 |
acgtggttgagcactcagcagtgctaaaaacacagaacac---------------aagggcaaaattagattgatggaattcgtttaatctaagaaaatc |
299 |
Q |
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| T |
2814354 |
acgtggttgagcactcaacactgctaaaaacacagaacacaaacacagaacacaaaagggcaaaattagattgatggaagtcgtttaatctaagaaaatc |
2814453 |
T |
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| Q |
300 |
attttcgtgatatgctagatctaagaaaatctagatttgtttatgtctattttctttcatcttctttaatttttg |
374 |
Q |
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| T |
2814454 |
atttccgtgatatgctagatctaagaaaatctagatttgtttatgtctattttctttcatcttctttaatttttg |
2814528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 47517953 - 47517880
Alignment:
| Q |
46 |
ccggcccaaaccggccaaaccgtatggaccgaagggtgtcgggtcaggtcgaacagttgacgcgggtcaatcgg |
119 |
Q |
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| T |
47517953 |
ccggcccaaaccggccgaaccggatgacctgaagcgtgtcgggtcgggtccaacagtttaagcgggtcaatcgg |
47517880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 40848968 - 40848867
Alignment:
| Q |
29 |
ggacaaaaataaaatatccggcccaaaccggccaaaccgtatggaccgaagggtgtcgggtcaggtcgaacagttgacgcgggtcaatcggcacaagtga |
128 |
Q |
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||||||||||| ||||| |||||||||| |||| || |||||| ||||||| | | |||||||||||||| ||||| ||| || || ||| |||| ||| |
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| T |
40848968 |
ggacaaaaatataatattcggcccaaactggccgaatcgtatgagccgaaggattttgggtcaggtcgaacggttgatgcgagttaagcggtacaaatga |
40848869 |
T |
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| Q |
129 |
aa |
130 |
Q |
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| T |
40848868 |
aa |
40848867 |
T |
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