View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14111_low_8 (Length: 311)
Name: NF14111_low_8
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_low_8 |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 12464596 - 12464705
Alignment:
| Q |
10 |
acacatgcatactcacttgacacttctacaactcatattagactgcactgcacatatatacccttcttacttatagtgaatctcttcacaaaagtacaca |
109 |
Q |
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| T |
12464596 |
acacatgcatactcacttgacacttctacaactcacattagactacactgcacatatatacccttcttacttatagtgaatctcttcacaaaagtacaca |
12464695 |
T |
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| Q |
110 |
tcattgtatg |
119 |
Q |
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| T |
12464696 |
tcattgtatg |
12464705 |
T |
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Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 12464791 - 12464880
Alignment:
| Q |
206 |
caccacataatcaaactcaatttaaaaatactcttttactatatatgagtttaaaaataacct-aataccttgtgaagcatatgacaatt |
294 |
Q |
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| T |
12464791 |
caccacataatcaaacctaatttaaaaatactattttactatatatgagtttaaaaataatctaaataccttgtgaagcatatgacaatt |
12464880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 12483483 - 12483568
Alignment:
| Q |
206 |
caccacataatcaaactcaatttaaaaatactcttttactatatatgagtttaaaaataacct-aataccttgtgaagcatatgacaatt |
294 |
Q |
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| T |
12483483 |
caccacataatcaaacacaatttaaaaatactcttttac----tatgagtttaaaaataacctaaataccttgagaagcatatgtcaatt |
12483568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 36994 - 36909
Alignment:
| Q |
206 |
caccacataatcaaactcaatttaaaaatactcttttactatatatgagtttaaaaataacct-aataccttgtgaagcatatgacaatt |
294 |
Q |
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| T |
36994 |
caccacataatcaaacacaatttaaaaatactcttttac----tatgagtttaaaaataacctaaataccttgagaagcatatgtcaatt |
36909 |
T |
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