View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14112_high_12 (Length: 236)
Name: NF14112_high_12
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14112_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 19334946 - 19335165
Alignment:
| Q |
1 |
ccttagaactgcccctgattagtgcttcttaattagttttgtttggtacttaaataagttcttttggtaaatggttcttcaatttagtttataagtaaaa |
100 |
Q |
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| T |
19334946 |
ccttagaactgcccctgattagtgcatcttaattagttttgtttggtacttaattaagttcttttggtaaatggttcttcaatttagtttataagtaaaa |
19335045 |
T |
|
| Q |
101 |
aatccataatcagaatttagaaatcattttcttttattttgcaatacttatttggtctttccataagtaaaggcatatgcttagtggagaaatatgaatc |
200 |
Q |
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| T |
19335046 |
aatccataataagaatttagaaatcattttcttttattttgcaatacttatttggtctttccataagt-aaggcatatgcttagtggagaaatacgaatc |
19335144 |
T |
|
| Q |
201 |
actctatcaaggtacattaat |
221 |
Q |
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||||||||| ||||||||||| |
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| T |
19335145 |
actctatcatggtacattaat |
19335165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 40646132 - 40646243
Alignment:
| Q |
93 |
aagtaaaaaatccataatcagaatttagaaatcattttcttttattttgcaatacttatttggtctttccataagtaaaggcatatgcttagtgg-agaa |
191 |
Q |
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|||||||||||| ||||| |||||||| || ||| |||||||||||||| ||||||||| |||||||||||||| ||| || ||||||||||| | || |
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| T |
40646132 |
aagtaaaaaatcaataataagaatttaaaagtcactttcttttattttgtaatacttatctggtctttccataaagtaagtcaaatgcttagtggaaaaa |
40646231 |
T |
|
| Q |
192 |
atatgaatcact |
203 |
Q |
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|||||||||||| |
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| T |
40646232 |
atatgaatcact |
40646243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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