View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14112_high_4 (Length: 462)
Name: NF14112_high_4
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14112_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 53096534 - 53096962
Alignment:
| Q |
19 |
atcaactatgatgaaaaacttcttaatcatgcaaaacaacaatactaagcatgaatttttagtttcttacctttccacctgaagaacaactttccatcaa |
118 |
Q |
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| T |
53096534 |
atcaactatgatgaaaaacttcttaatcatgcaaaacaacaatactaagcatgaatttttagtttcttacctttccacctgaagaacaactttccatcaa |
53096633 |
T |
|
| Q |
119 |
atcgtgtttggagttgcaaatagcagcattcagccaatgtggagctttagcggcagcagaagaccttaagnnnnnnnntccatcgaatttggatgagcag |
218 |
Q |
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| T |
53096634 |
atcgtgtttggagttgcaaatagcagcattcagccaatgtggagctttagcggcagcagaagaccttaagaaaaaaaatccatcgaatttggatgagcag |
53096733 |
T |
|
| Q |
219 |
aaatgaagggggtggaggaaattaggctacataacaaggtcaaaatgaagttgagtaaaagaaatttactgcaaacaagaagcattagttgcatgcgtcg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53096734 |
aaatgaagggggtggaggaaattaggctacataacaaggtcaaaatgaagttgagtaaaagaaatttactgcaaacaagaagcattagttgcatacgtcg |
53096833 |
T |
|
| Q |
319 |
agcctggcaataatgttagaccttctgttaaaacaaccaaagatgtctaggtattaaccaaatgataaaatactttagtcatcaaccaagtaagaaaaat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
53096834 |
agcctggcaataatgttagaccttctgttaaaacaaccaaagatgtctaggtattaaccaaatgataaaatgctttagtcatcacccaagtaagaaaaat |
53096933 |
T |
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| Q |
419 |
cactgcttgtaacaaccaacgagcaaaat |
447 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
53096934 |
cactgcttgtaacaaccaacgagcaaaat |
53096962 |
T |
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