View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14112_high_5 (Length: 443)
Name: NF14112_high_5
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14112_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 410
Target Start/End: Complemental strand, 38792312 - 38791911
Alignment:
| Q |
9 |
gaagaaaatggcaagtgctgtaatatgcaatactttgnnnnnnnntattactattgccttgaacttgtgtttatccctttttgaggtttaaaattgaact |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38792312 |
gaagaatatggcaagtgctgtaatatgcaatactttgaaaaaaa-tattactactgccttaaacctgtgtttatccctttttgaggtttaaaattgaact |
38792214 |
T |
|
| Q |
109 |
gttttaagagttatttttggtttcagaattttgaggacnnnnnnnnggggtatttcgtcagtcgtgctcatgatattatggttgcatgcaataatgcata |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| || | |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38792213 |
gttttaagagttatttttggtttcagaatttcgaggactttgttgtggagcatttcgtcagccgtgctcatgatattatggttgcatgcaataatgcata |
38792114 |
T |
|
| Q |
209 |
catggaaaatgatgttgatgagtttgacggaagctgcgcagaaagaatacacatcaaaggttgcttagggctgctcaagatttcattagctggacatatt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||| ||| |||||||||| ||||||||||||||| |||||| |||||||| ||| |||||||||| |
|
|
| T |
38792113 |
catggaaaatgatgttgatgagtttgacgaatgctgtgcaaaaagaatacatatcaaaggttgcttacagctgctgaagatttctttaactggacatatg |
38792014 |
T |
|
| Q |
309 |
g-agcgcttgtcgaagagtttataagaattggagctaaaaactgtgagaaattcatttatgaagcaacaagaagagcaaacaaaagaatcttccctgaga |
407 |
Q |
| |
|
| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
38792013 |
gaagcacttgtcaaagagtttataagaattggagctaagaactgtgagaaattcctccatgaagcaacaagaagagcaaccaaaagaatctttcctgaga |
38791914 |
T |
|
| Q |
408 |
gta |
410 |
Q |
| |
|
||| |
|
|
| T |
38791913 |
gta |
38791911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 52474838 - 52474896
Alignment:
| Q |
310 |
agcgcttgtcgaagagtttataagaattggagctaaaaactgtgagaaattcatttatg |
368 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| | |||||||||||| |||||| |
|
|
| T |
52474838 |
agcgcttgtcaaagagtttataagatttggagctaaggagtgtgagaaattcctttatg |
52474896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 4519926 - 4519890
Alignment:
| Q |
110 |
ttttaagagttatttttggtttcagaattttgaggac |
146 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
4519926 |
ttttaagtgttatttttggttttagaattttgaggac |
4519890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 5838392 - 5838358
Alignment:
| Q |
111 |
tttaagagttatttttggtttcagaattttgagga |
145 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
5838392 |
tttaagtgttatttttggtttcagaattttgagga |
5838358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University