View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14112_low_10 (Length: 359)

Name: NF14112_low_10
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14112_low_10
NF14112_low_10
[»] chr6 (11 HSPs)
chr6 (17-341)||(30944322-30944646)
chr6 (59-341)||(30985692-30985969)
chr6 (59-341)||(30991856-30992133)
chr6 (62-341)||(30954629-30954906)
chr6 (59-334)||(30960369-30960644)
chr6 (99-341)||(31223914-31224156)
chr6 (205-341)||(31145935-31146071)
chr6 (205-341)||(31189993-31190129)
chr6 (223-341)||(31201800-31201918)
chr6 (221-340)||(31131687-31131805)
chr6 (136-341)||(31172248-31172453)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 30944322 - 30944646
Alignment:
Q  17 aaggaaagacctcactgtaatttttatttacttagnnnnnnncttccatcagcatataataagaaaattttctcattataaaaacaggtgttggaagtgc 116  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30944322 aaggaaagacctcactgtaatttttatttatttagtttttttcttccatcagcatataataagaaaattttctcattataaaaacaggtgttggaagtgt 30944421  T
Q  117 agcaataatagcattgctgatgtgcatcataatctgttgttatagaagcaagtcatcggtactacatgtagaattttggtttaagacaaagaatgatata 216  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  30944422 agcaatagttgcattgctgatgtgcatcataatctgttgttatagaggcaagtcatcgatactacatgtaaaattttggtttaagacaaagaatgatata 30944521  T
Q  217 aacgttgaagaatttttaaaagatcatagagcactattacaaaaaagatataaattttcagaaataaagaaaatgacaaactcattcaaaattaaacttg 316  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30944522 aacattgaagaatttttaaaagatcatagagcactattacaaaaaagatataaattttcagaaataaagaaaatgacaaactcattcaaaattaaacttg 30944621  T
Q  317 gtcaagggggttttggtgctgtgta 341  Q
    |||||||||||||||||||||||||    
T  30944622 gtcaagggggttttggtgctgtgta 30944646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 59 - 341
Target Start/End: Original strand, 30985692 - 30985969
Alignment:
Q  59 cttccatcagcatataataagaaaattttctcattataaaaacaggtgttggaagtgcagcaataatagcattgctgatgtgcatcataatctgttgtta 158  Q
    ||||||||||||  |||||||| ||||  || ||| ||| | ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  30985692 cttccatcagcacttaataagataatt--cttattctaacagcaggtgttggaagtgcagcaatggtagcattgctgatgtgcatcataatctgttgtta 30985789  T
Q  159 tagaagcaagtcatcggtactacatgtagaattttggtttaagacaaagaatgatataaacgttgaagaatttttaaaagatcatagagcactattacaa 258  Q
    |||| ||||||||||| |||||   ||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||  ||||| |||    
T  30985790 tagaggcaagtcatcgatacta---gtaaaattttggtttaagacaaagaatgatataaacattgaagcatttttaaaagaccatggagttctattgcaa 30985886  T
Q  259 aaaagatataaattttcagaaataaagaaaatgacaaactcattcaaaattaaacttggtcaagggggttttggtgctgtgta 341  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  30985887 aaaagatataagttttcagaaataaagaaaattacaaactcattcaaaattaaagttggtcaagggggttttggtgcggtgta 30985969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 59 - 341
Target Start/End: Original strand, 30991856 - 30992133
Alignment:
Q  59 cttccatcagcatataataagaaaattttctcattataaaaacaggtgttggaagtgcagcaataatagcattgctgatgtgcatcataatctgttgtta 158  Q
    ||||||||||||  |||||||| ||||  || ||| ||| | ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  30991856 cttccatcagcacttaataagataatt--cttattctaacagcaggtgttggaagtgcagcaatggtagcattgctgatgtgcatcataatctgttgtta 30991953  T
Q  159 tagaagcaagtcatcggtactacatgtagaattttggtttaagacaaagaatgatataaacgttgaagaatttttaaaagatcatagagcactattacaa 258  Q
    |||| ||||||||||| |||||   ||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||  ||||| |||    
T  30991954 tagaggcaagtcatcgatacta---gtaaaattttggtttaagacaaagaatgatataaacattgaagcatttttaaaagaccatggagttctattgcaa 30992050  T
Q  259 aaaagatataaattttcagaaataaagaaaatgacaaactcattcaaaattaaacttggtcaagggggttttggtgctgtgta 341  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  30992051 aaaagatataagttttcagaaataaagaaaattacaaactcattcaaaattaaagttggtcaagggggttttggtgcggtgta 30992133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 62 - 341
Target Start/End: Original strand, 30954629 - 30954906
Alignment:
Q  62 ccatcagcatataataagaaaattttctcattataaaaacaggtgttggaagtgcagcaataatagcattgctgatgtgcatcataatctgttgttatag 161  Q
    ||||||||| | ||||||| ||||  || ||||||| |||||||||||||| |||||||||  ||||||||||||||||||||||||| ||||| ||||     
T  30954629 ccatcagcacaaaataagataatt--cttattataacaacaggtgttggaattgcagcaatggtagcattgctgatgtgcatcataatttgttggtataa 30954726  T
Q  162 aagcaagtcatcggtactacatgtagaattttggtttaagacaaagaatgatataaacgttgaagaatttttaaaagatcatagagcactattacaaaaa 261  Q
    | || |||||| | ||||||| ||  | |||  ||||||||||||||||||||||||| |||||| |||||||||||| ||| |||| ||| | ||||||    
T  30954727 aggcgagtcattgatactacaagtgaagtttctgtttaagacaaagaatgatataaacattgaagcatttttaaaagaccatggagctctagtgcaaaaa 30954826  T
Q  262 agatataaattttcagaaataaagaaaatgacaaactcattcaaaattaaacttggtcaagggggttttggtgctgtgta 341  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  30954827 agatataaattttcagaaataaagaaaataacaaattcattcaaaattaaacttggtcaagggggtttcggtgctgtgta 30954906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 59 - 334
Target Start/End: Original strand, 30960369 - 30960644
Alignment:
Q  59 cttccatcagcatataataagaaaattttctcattataaaaacaggtgttggaagtgcagcaataatagcattgctgatgtgcatcataatctgttgtta 158  Q
    ||||||||| || |||| |||| |||| ||| ||| ||| ||||||||||||||||||||||||   | |  |||| ||| |||||||||| | |||||     
T  30960369 cttccatcaacacataacaagataattctcttattctaacaacaggtgttggaagtgcagcaatggcaaccctgctaatgggcatcataatttattgttt 30960468  T
Q  159 tagaagcaagtcatcggtactacatgtagaattttggtttaagacaaagaatgatataaacgttgaagaatttttaaaagatcatagagcactattacaa 258  Q
    |||| ||||| ||||  | ||||| ||| |||||   | ||||||||| |||||||||||| |||||| |||| ||||||||||| |||| ||| | |||    
T  30960469 tagaggcaagccatctatgctacaagtaaaatttccatctaagacaaataatgatataaacattgaagcatttctaaaagatcatggagctctactgcaa 30960568  T
Q  259 aaaagatataaattttcagaaataaagaaaatgacaaactcattcaaaattaaacttggtcaagggggttttggtg 334  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  30960569 aaaagatataaattttcagaaataaagaaaatgacaaactcgttcaaaattaaacttggtcaagggggatttggtg 30960644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 99 - 341
Target Start/End: Original strand, 31223914 - 31224156
Alignment:
Q  99 aacaggtgttggaagtgcagcaataatagcattgctgatgtgcatcataatctgttgttatagaagcaagtcatcggtactacatgtagaattttggttt 198  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||| |||| || |||| |||||||||   ||| ||| |||  || |||||||    
T  31223914 aacaggtgttggaagtgcagcaatggtagcattgctgatgtgcatcacaatttgttattttagaggcaagtcattaatacaacaagtaacatcttggttt 31224013  T
Q  199 aagacaaagaatgatataaacgttgaagaatttttaaaagatcatagagcactattacaaaaaagatataaattttcagaaataaagaaaatgacaaact 298  Q
    | |||||||||||||| |||| |||||| |||||||||||||||| |||| ||||| || ||||||||||||| ||||||||||||||| ||||||||||    
T  31224014 aggacaaagaatgataaaaacattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaaataaagaacatgacaaact 31224113  T
Q  299 cattcaaaattaaacttggtcaagggggttttggtgctgtgta 341  Q
    | || ||   ||| || || |||||||||||||||| ||||||    
T  31224114 cgttaaaggataagctcgggcaagggggttttggtgttgtgta 31224156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 205 - 341
Target Start/End: Complemental strand, 31146071 - 31145935
Alignment:
Q  205 aagaatgatataaacgttgaagaatttttaaaagatcatagagcactattacaaaaaagatataaattttcagaaataaagaaaatgacaaactcattca 304  Q
    |||||||||| |||  |||||| |||||||||||||||| |||| ||||| || ||||||||||||| |||||||||||||||||||||| |||| ||||    
T  31146071 aagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaaataaagaaaatgacagactctttca 31145972  T
Q  305 aaattaaacttggtcaagggggttttggtgctgtgta 341  Q
    |  |||||||||||||||| |||||||||| ||||||    
T  31145971 aggttaaacttggtcaaggtggttttggtgttgtgta 31145935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 205 - 341
Target Start/End: Complemental strand, 31190129 - 31189993
Alignment:
Q  205 aagaatgatataaacgttgaagaatttttaaaagatcatagagcactattacaaaaaagatataaattttcagaaataaagaaaatgacaaactcattca 304  Q
    |||||||||| |||  |||||| |||||||||||||||| |||| ||||| || ||||||||||||| ||||||| |||||||||||||| |||| ||||    
T  31190129 aagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttca 31190030  T
Q  305 aaattaaacttggtcaagggggttttggtgctgtgta 341  Q
    |  ||||||||||||||||||||||||||| ||||||    
T  31190029 aggttaaacttggtcaagggggttttggtgttgtgta 31189993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 223 - 341
Target Start/End: Complemental strand, 31201918 - 31201800
Alignment:
Q  223 gaagaatttttaaaagatcatagagcactattacaaaaaagatataaattttcagaaataaagaaaatgacaaactcattcaaaattaaacttggtcaag 322  Q
    |||| |||||||||||||||| |||| || || || ||||||||||||| ||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  31201918 gaagcatttttaaaagatcatggagctctgttgcagaaaagatataaatattcagaaataaagaaaatgacaaactctttcaaggttaaacttggtcaag 31201819  T
Q  323 ggggttttggtgctgtgta 341  Q
    |||||||||||| ||||||    
T  31201818 ggggttttggtgttgtgta 31201800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 221 - 340
Target Start/End: Complemental strand, 31131805 - 31131687
Alignment:
Q  221 ttgaagaatttttaaaagatcatagagcactattacaaaaaagatataaattttcagaaataaagaaaatgacaaactcattcaaaattaaacttggtca 320  Q
    |||||| ||||||||||||||||||||| ||||| || |||||||||||||| |  |||||||||| |||| |||||||||||||  |||||||||||||    
T  31131805 ttgaagcatttttaaaagatcatagagctctattgcagaaaagatataaattctttgaaataaagagaatg-caaactcattcaaggttaaacttggtca 31131707  T
Q  321 agggggttttggtgctgtgt 340  Q
    ||| ||||||||||||||||    
T  31131706 aggaggttttggtgctgtgt 31131687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 136 - 341
Target Start/End: Complemental strand, 31172453 - 31172248
Alignment:
Q  136 atgtgcatcataatctgttgttatagaagcaagtcatcggtactacatgtagaattttggtttaagacaaagaatgatataaacgttgaagaatttttaa 235  Q
    ||||||||||| || | ||||  |||||||||||||||  ||| ||| | |   ||| ||||||  || ||||||||||  ||  |||||| ||||||||    
T  31172453 atgtgcatcattatttattgtcttagaagcaagtcatcaatacgacagggaaggtttcggtttagaaccaagaatgataacaatattgaagcatttttaa 31172354  T
Q  236 aagatcatagagcactattacaaaaaagatataaattttcagaaataaagaaaatgacaaactcattcaaaattaaacttggtcaagggggttttggtgc 335  Q
    |||| ||| ||||  |||| || ||||||||||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||| || |||||||     
T  31172353 aagaccatggagctttattgcagaaaagatataaattttctgaaataaagaaaatgacaaactctttcaaggttaaacttggtcaaggaggctttggtgt 31172254  T
Q  336 tgtgta 341  Q
    ||||||    
T  31172253 tgtgta 31172248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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