View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14112_low_11 (Length: 349)
Name: NF14112_low_11
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14112_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 33186799 - 33187133
Alignment:
| Q |
1 |
ttatggaaacagtttatgaaatgtttataagttgttttttaacttattttcattagtttagtaaaaaataactttatttcataagtnnnnnnnnnnnnnn |
100 |
Q |
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| T |
33186799 |
ttatggaatcagtttatgaaatgtttataagttgttttttaacttattttcattagtttagtaaaaa-taactttatttcataagttatatattatatat |
33186897 |
T |
|
| Q |
101 |
nngatcacttttaggattagggttcatgcaataatagcttaattaaggtatttgtgcaaatataatannnnnnnaatatataaaaaattaaattatgaga |
200 |
Q |
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| T |
33186898 |
atgatcacttttatgattagggtttatg-aataatagcttaattaaggtatttgtgcaaatataatatttttttaatatataaaaaattaaattatgaga |
33186996 |
T |
|
| Q |
201 |
gacaggcctcgtgtaagatcgtggagagtcattttagcatttataataaaatttacgtataacttatcaagtcacaacatatgtgagcagaaggtctaac |
300 |
Q |
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| T |
33186997 |
gacaggcctcgtgtaagatcgtggagagtcattttagcatttataataaaatttatgtataacttatcaagtcacaacatatgtgagcagaaggtctaac |
33187096 |
T |
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| Q |
301 |
catatgtgataaccgtgaattatataaacataacctatg |
339 |
Q |
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| T |
33187097 |
catatgtgataaccgtgaat--tataaacataacctatg |
33187133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44747158 - 44747195
Alignment:
| Q |
1 |
ttatggaaacagtttatgaaatgtttataagttgtttt |
38 |
Q |
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| T |
44747158 |
ttatggaaacagtttatgacatgttcataagttgtttt |
44747195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3924710 - 3924673
Alignment:
| Q |
1 |
ttatggaaacagtttatgaaatgtttataagttgtttt |
38 |
Q |
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||||| ||||| |||||||||||||||||||||||||| |
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| T |
3924710 |
ttatgaaaacaatttatgaaatgtttataagttgtttt |
3924673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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