View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14112_low_13 (Length: 292)
Name: NF14112_low_13
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14112_low_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 35 - 214
Target Start/End: Original strand, 8683056 - 8683235
Alignment:
| Q |
35 |
gataattagggttttggatgtaatttcaggtggtagctgcaggttcgaagttcagtttaagaagaggaaacagtggttcatgttcttctaataatgttgt |
134 |
Q |
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| T |
8683056 |
gataattagggttttgaatgtaatttcaggtggtagctgcaggttcgaagttcagtttaagaagaggaaacagtggttcatgttcttctaataatgttgt |
8683155 |
T |
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| Q |
135 |
tatcaatgaagaactttctagaattaataacaaaagtgcttgtttttctcaagacccttcttgtgtttcattcactactt |
214 |
Q |
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| T |
8683156 |
tatcaatgaagaactttctagaattaataacaaaagtgcttgtttttctcaagacccttcttgtgtttcattcactactt |
8683235 |
T |
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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 43408967 - 43408882
Alignment:
| Q |
207 |
cactacttccctttcctccgccttggtgttgttgtaggcaaggagcccatgttagtgctaatggtaaattgtgcgtcttgcacact |
292 |
Q |
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| T |
43408967 |
cactacttccctttcctcctccttgttgttgttgtaggcaaggagcccatgttagtgctaatggtaaattgtgcgtcttgcacact |
43408882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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