View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14112_low_14 (Length: 286)
Name: NF14112_low_14
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14112_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 10107946 - 10107740
Alignment:
| Q |
13 |
aatataaatattgataaacccattttcccttttattaattccttgcttttcaccatagctttgattccatagaaatcttccaacactgtgacaacactag |
112 |
Q |
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| T |
10107946 |
aatataaatattgataaacccattttcccttttattaattccttgcttttcaccatagctttgattccgtagaaatcttccaacactgtgacaacactag |
10107847 |
T |
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| Q |
113 |
ctagttgccatatcaaagtaaggtaaacaaatccaatgaaataaaatatcattatgaaaatcaacaaaacaataccaccactttttatactaatagtaat |
212 |
Q |
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| T |
10107846 |
ctagttgccatatcaaagtaaggtaaacaaatccaatgaaataaaatatcattatgaaaatcaacaaaacaataccaccactttttatactaatagtaat |
10107747 |
T |
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| Q |
213 |
tgctaac |
219 |
Q |
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| T |
10107746 |
tgctaac |
10107740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 40724794 - 40724897
Alignment:
| Q |
19 |
aatattgataaacccattttcccttttattaattccttgcttttcaccatagctttgattccatagaaatcttccaacactgtgacaacactagctagtt |
118 |
Q |
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| T |
40724794 |
aatatggacaaacccatcttcccttttatcaattccttacttttcatcattgcttcaaatccatatgaatcttctaacacggttacaacattagccaatt |
40724893 |
T |
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| Q |
119 |
gcca |
122 |
Q |
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|||| |
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| T |
40724894 |
gcca |
40724897 |
T |
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