View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14112_low_15 (Length: 248)
Name: NF14112_low_15
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14112_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 19719039 - 19719274
Alignment:
| Q |
1 |
ctttaacattggttagcaagtgatgaagaccatttgttcacaaacatgtatatacacaaacatgtccactacatctttacaaacaccaatgataacacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
19719039 |
ctttaacattggttagcaagtgatgaagtccatttgttcacaaacatgtatatacacaaacatgtccactacatctttacacacaacaatgataacacaa |
19719138 |
T |
|
| Q |
101 |
tgaaacacaaacatggatagtgaaactaagagaatgaattgagtttgtatactattcaatgcatttaatggaaaaacatacacaaagtacatagca-ggg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19719139 |
tgaaacacaaacatggatagtgaaactaagagaatgaattgagtttgtatactattcaatgcatttaatggaaaaacatacacaaagtacatagcagggg |
19719238 |
T |
|
| Q |
200 |
agctaatggcttgggcagcaccgaattatttattat |
235 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19719239 |
agctaatggcttgggcaacaccgaattatttattat |
19719274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 29170516 - 29170453
Alignment:
| Q |
1 |
ctttaacattggttagcaagtgatgaagaccatttgttcacaaacatgtatatacacaaacatgtcc |
67 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29170516 |
ctttaacattggtta---agtgtcgaagaccatttgttcacaaacatgtatatacacaaacatgtcc |
29170453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23346545 - 23346582
Alignment:
| Q |
1 |
ctttaacattggttagcaagtgatgaagaccatttgtt |
38 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
23346545 |
ctttaacattggttaacaagtgacgaagaccatttgtt |
23346582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University