View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14112_low_2 (Length: 696)

Name: NF14112_low_2
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14112_low_2
NF14112_low_2
[»] chr5 (5 HSPs)
chr5 (117-678)||(4175836-4176400)
chr5 (262-673)||(4171822-4172258)
chr5 (32-120)||(14591840-14591928)
chr5 (27-120)||(30917461-30917554)
chr5 (32-120)||(19828629-19828717)
[»] chr3 (2 HSPs)
chr3 (32-120)||(40396829-40396917)
chr3 (45-104)||(50232689-50232747)
[»] chr4 (3 HSPs)
chr4 (15-105)||(25871128-25871218)
chr4 (15-120)||(25506234-25506339)
chr4 (15-105)||(16748843-16748933)
[»] chr6 (1 HSPs)
chr6 (15-120)||(31121160-31121265)
[»] chr1 (1 HSPs)
chr1 (32-105)||(50052797-50052870)
[»] chr2 (1 HSPs)
chr2 (24-104)||(13007964-13008044)


Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 117 - 678
Target Start/End: Original strand, 4175836 - 4176400
Alignment:
Q  117 aattcctaagcaatgtagtgttttttggtgtaccggagcaaaaaccaataatgataaatgataaatatctaagataagagaccatcctatgcaatgcaca 216  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175836 aattcctaagcaatgtagagttttttggtgtaccgtagcaaaaaccaataatgataaatgataaatatctaagataagagaccatcctatgcaatgcaca 4175935  T
Q  217 ccacatatattattgaccatatataattatatacctttcgtcctttt---tgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatc 313  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175936 caacatatattattgaccatatataattatataccttccgtccttttctttgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatc 4176035  T
Q  314 ctgtacagccgaatttatgaactgatataagaattgtgcaacaaggcaagggataaaaataaaaaggtaacgaattaaattacccttgaatttctaaata 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4176036 ctgtacagccgaatttatgaactgatataagaattgtgcaacaaggcaagggataaaaataaaaaggtaacgaattaaattacccttgaatttctaaata 4176135  T
Q  414 ttgagttctgagataatttgctactccaattgaatcaagagcactccacccatttttggaaagggtgagtgaagttccaccagctctaagtgactccgac 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4176136 ttgagttctgagataatttgctactccaattgaatcaagagcactccacccatttttggaaagggtgagtgaagttccaccagttctaagtgactccgac 4176235  T
Q  514 tgttccagtaccaaagaccgaacaccaagcctgaaaattaaacaatgaataaagtgttatcattaaagtgatgatggtggataaataatagattgaggaa 613  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4176236 tgttccagtaccaaagaccgaacaccaagcctggaaattaaacaatgaataaagtgttatcattagagtgatgatggtggataaataatagattgaggaa 4176335  T
Q  614 ctagagttgaaacctgtgaagggatagtgcagttgcaaggcctgctatcccaccacccacgatta 678  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4176336 ctagagttgaaacctgtgaagggatagtgcagttgcaaggcctgctatcccaccacccacgatta 4176400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 262 - 673
Target Start/End: Original strand, 4171822 - 4172258
Alignment:
Q  262 tttgaaatttaaagcacgtagttcttttccatcctcagatttcagcactatcctgtacagccgaatttatgaac---------------tgatataagaa 346  Q
    ||||||||| || |||||||||||| ||||||||||||| |||| ||| |||||||||||| ||  ||||||||               | ||||| | |    
T  4171822 tttgaaattgaaggcacgtagttctcttccatcctcagacttcaccaccatcctgtacagctgatattatgaaccagctcaagctcagctaatatatgca 4171921  T
Q  347 ttgtgcaacaaggcaagggataaaaataaaaaggtaacgaattaaattacccttgaatttctaaatattgagttctgagataatttgctactccaattga 446  Q
    ||||||||| ||||||| ||||||||| ||||  |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  4171922 ttgtgcaaccaggcaagtgataaaaattaaaac-taacaaattaagttacccttgaatttctaaatattgagttctgaggtaatttgctactccaatgga 4172020  T
Q  447 atcaagagcactccacccatttttggaaagggtgagtgaagttccaccagctctaagtgactccgactgttccagtaccaaagaccgaacaccaagcctg 546  Q
    ||||||  ||||||||||||| ||| |||||||||||||||||||||| | || ||||||||| ||||| ||||| || | |||||||||||||||||||    
T  4172021 atcaagtacactccacccattcttgaaaagggtgagtgaagttccaccggttcgaagtgactctgactgctccagcacaagagaccgaacaccaagcctg 4172120  T
Q  547 aaaattaaaca---------atgaataaagtgttatcattaaagtga---tgatggtggataaataatagattgaggaactagagttgaaacctgtgaag 634  Q
    | |||| ||||         |  |||||| |||||  |  ||  |||   ||||||| || ||  || ||||||| || |||||||||||||||||||||    
T  4172121 agaattcaacagaagcgggtacaaataaaatgttagaaaaaacatgaaagtgatggtagaaaatgaagagattga-gagctagagttgaaacctgtgaag 4172219  T
Q  635 ggatagtgcagttgcaaggcctgctatcccaccacccac 673  Q
    |||||| ||||||||||||||||| || |||||||||||    
T  4172220 ggatagagcagttgcaaggcctgcaatgccaccacccac 4172258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 14591928 - 14591840
Alignment:
Q  32 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 120  Q
    |||||||||||| |||||||||| ||| || ||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  14591928 aaaatgaatgaagggctaagatttattcagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggaggaaatt 14591840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 30917461 - 30917554
Alignment:
Q  27 acattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 120  Q
    ||||||||||||||||| || |||||||||||||| ||| |||||||| |||||| ||||| |||||||||||| |||| || ||||| |||||    
T  30917461 acattaaaatgaatgaagggttaagattaattaagatgtcattaaaagaaatggacggctaagattatttcactcgagaaaataggagaaaatt 30917554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 19828717 - 19828629
Alignment:
Q  32 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 120  Q
    |||||||||||| |||||| |||| ||||| ||||||||||| | ||||| ||||| ||||||||||| ||||| |||| |||||||||    
T  19828717 aaaatgaatgaagggctaaaattagttaagatgttattaaaatggatggacggctaagattatttcacaggagaaaacatgaggaaatt 19828629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 40396829 - 40396917
Alignment:
Q  32 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 120  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||    
T  40396829 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggagaaaatt 40396917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 50232689 - 50232747
Alignment:
Q  45 ggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggag 104  Q
    ||||||||||||||||| ||| ||||||| |||||||||| || ||||||||||| ||||    
T  50232689 ggctaagattaattaagatgtcattaaaa-gaatggatggttaagattatttcacaggag 50232747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 25871218 - 25871128
Alignment:
Q  15 aatgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 105  Q
    |||||||| |||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||||| || || ||||||||||| |||||    
T  25871218 aatgaaaatgacacattgaaatgaatgaaaggctgagattagttaaggtgtcattaaaaggaatggacggttaagattatttcacaggaga 25871128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 25506339 - 25506234
Alignment:
Q  15 aatgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggag 114  Q
    |||||||| |||||||||||||||||||| |||| |||||||||||||| | |||||||| |||||| ||||| ||||  ||||| ||||| ||| ||||    
T  25506339 aatgaaaatgacacattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactggag 25506240  T
Q  115 gaaatt 120  Q
    ||||||    
T  25506239 gaaatt 25506234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 16748933 - 16748843
Alignment:
Q  15 aatgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 105  Q
    |||||||| |||||||| ||||||||||||| || |||||| ||||||||| ||||||| ||||||| | ||| ||||||||||| |||||    
T  16748933 aatgaaaatgacacattgaaatgaatgaaagactgagattagttaaggtgtcattaaaaagaatggacgactaagattatttcacaggaga 16748843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 31121160 - 31121265
Alignment:
Q  15 aatgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggag 114  Q
    |||||||| |||||||||||||||||||| |||| |||||||||||||| | |||||||| |||||| ||||| ||||  ||||| ||||| ||| ||||    
T  31121160 aatgaaaatgacacattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggctaagattgattcacaggagaaaactggag 31121259  T
Q  115 gaaatt 120  Q
    ||||||    
T  31121260 gaaatt 31121265  T

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Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 50052870 - 50052797
Alignment:
Q  32 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 105  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||||    
T  50052870 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctgagattatttcacaggaga 50052797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 13007964 - 13008044
Alignment:
Q  24 gacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggag 104  Q
    ||||| |||||||||||||| ||||||||| | ||||||||| |||||||||||||||  || |  |||||||||||||||    
T  13007964 gacacgttaaaatgaatgaagggctaagatcagttaaggtgtcattaaaaggaatggacagccaaaattatttcactggag 13008044  T

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