View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14112_low_3 (Length: 493)
Name: NF14112_low_3
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14112_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 21 - 478
Target Start/End: Complemental strand, 9255813 - 9255364
Alignment:
| Q |
21 |
cggtgaaatttaattctccatgaagatggagagtaccgacgactagatggtaagacccggaatgaaagtagattcgtgagaggggtgcaactgcttgagt |
120 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||| |||||||||||||||| ||||||| |
|
|
| T |
9255813 |
cggtgaaatttaattctccgtgaagatggagagtaccgatgacaagatggtcagacccggaatggaagtagattcatgagaggggtgcaacttcttgagt |
9255714 |
T |
|
| Q |
121 |
ggaaaggatttttgcacccgtttgcgtatttataaactcattatcagactatttcttatccaatatatcatatatgtatcttctaacaactcgtcttata |
220 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| |
|
|
| T |
9255713 |
ggaaaagatttttgcacccgtttgcgtacttataaactcattatcagactatttcttatccaatatat-------gtctctt-taacaactcgtcttata |
9255622 |
T |
|
| Q |
221 |
tttctttccatatgtctcgttgcagaatttcatatggtaaactgaaatagtacagttaacagacatatgttcttccatatataatagaaaaataccgtgg |
320 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
9255621 |
tttctttccatatggctcgttgcagaatttcatatggtaaactgaaatagtacaattaatagacatatgttcttccatatatgatagaaatataccgtgg |
9255522 |
T |
|
| Q |
321 |
aaacnnnnnnngtcaagaagaattcattagtagaggctctgttgtatcttcatcaataaaactaggagagccaacatcagtttcatgagagttgacttca |
420 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9255521 |
aaacaaaagaagtcaagaagaattcattagtagaggctctgttgtatcttcatcaataaaactaggagagccagcatcagtttcatgagagttgacttca |
9255422 |
T |
|
| Q |
421 |
atatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaacat |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9255421 |
atatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaacat |
9255364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 475
Target Start/End: Complemental strand, 9318703 - 9318629
Alignment:
| Q |
401 |
tttcatgagagttgacttcaatatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaa |
475 |
Q |
| |
|
|||||| ||||||||| |||| ||| | |||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
9318703 |
tttcattagagttgacgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaa |
9318629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 475
Target Start/End: Original strand, 9319599 - 9319673
Alignment:
| Q |
401 |
tttcatgagagttgacttcaatatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaa |
475 |
Q |
| |
|
|||||| |||||||| |||| ||| | |||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
9319599 |
tttcattagagttgatgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaa |
9319673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 475
Target Start/End: Original strand, 9349916 - 9349990
Alignment:
| Q |
401 |
tttcatgagagttgacttcaatatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaa |
475 |
Q |
| |
|
|||||| |||||||| |||| ||| | |||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
9349916 |
tttcattagagttgatgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaa |
9349990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 478
Target Start/End: Complemental strand, 15927613 - 15927532
Alignment:
| Q |
397 |
tcagtttcatgagagttgacttcaatatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaacat |
478 |
Q |
| |
|
|||||||||| ||||||||| |||| ||| | | |||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
15927613 |
tcagtttcattagagttgacgtcaaggtcttcctcaatcatttcatttggatacaaagagggctttggaggcatttcaacat |
15927532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University