View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14112_low_4 (Length: 484)
Name: NF14112_low_4
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14112_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 470
Target Start/End: Original strand, 7787116 - 7787579
Alignment:
| Q |
8 |
aagcaaaggtgtaaaaagaaacgcacactacaaaaagtgaaggnnnnnnnnntcattttgtccacataattcatctcgagagagggacaatcgacggcaa |
107 |
Q |
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| T |
7787116 |
aagcaaaattgtaaaaagaaacgcatactacaaaaagtgaaggaaaaaaaaatcattttgtccacataattcatctcgagagagggacaatcgacggcaa |
7787215 |
T |
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| Q |
108 |
cagcatgtgannnnnnnagggggacaacataatttggtggatcaaacatacagctgaaatgtaagtatacaacaaatactctcaaacatcagtgcataaa |
207 |
Q |
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| T |
7787216 |
caccatgtgatttttttagggcgacaacataatttggtggatcaaacatacagctgaaatgtaagtatacaacaaatactctcaaacatcagtgcataaa |
7787315 |
T |
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| Q |
208 |
taagtaaattaaaaacatccgaagaatgccattcaactatcgaatttaa-tgtaaacagagaaggagattgctttctgtaacatcgcaaccgagcaagat |
306 |
Q |
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| T |
7787316 |
taagtaaattaaaaacatccgaagaatgccattcaactatagaatttaaatgtaaacagagaaggagattgttttctgtaacatcgcaaccgagcaagat |
7787415 |
T |
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| Q |
307 |
gccaatggattcaaggtaataagttgcaaaaacaagtaacagtgcaagattcaccagggtccgataaaacctcaagactcaaagacgtactgatatatag |
406 |
Q |
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| T |
7787416 |
gccaatggattcaaggtaataagttgcaaaaacaagtaacagtgcaagattcaccagggtccgataaaacctcaagactcaaagacgtactgatatataa |
7787515 |
T |
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| Q |
407 |
ctcatcaacgaattcctcacaccggcagcaaagtttgaacctatgtttctgttggcagaaaact |
470 |
Q |
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| T |
7787516 |
ctcatcaacgaattcctcacaccggcagcaaagtttgaacctatgtttatgttggcagaaaact |
7787579 |
T |
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