View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14112_low_5 (Length: 474)

Name: NF14112_low_5
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14112_low_5
NF14112_low_5
[»] chr1 (5 HSPs)
chr1 (1-458)||(43471774-43472238)
chr1 (200-243)||(26418774-26418817)
chr1 (200-243)||(32108463-32108506)
chr1 (176-227)||(5714785-5714836)
chr1 (317-452)||(47142502-47142637)
[»] chr3 (4 HSPs)
chr3 (278-454)||(42595877-42596051)
chr3 (200-243)||(32073593-32073636)
chr3 (197-273)||(42595642-42595717)
chr3 (177-243)||(17058781-17058847)
[»] chr7 (5 HSPs)
chr7 (200-243)||(29526865-29526908)
chr7 (199-243)||(7097405-7097449)
chr7 (135-221)||(13597025-13597111)
chr7 (325-454)||(11567694-11567823)
chr7 (124-184)||(47300343-47300403)
[»] chr6 (2 HSPs)
chr6 (200-243)||(15950837-15950880)
chr6 (310-454)||(19110468-19110612)
[»] chr4 (5 HSPs)
chr4 (200-243)||(47783028-47783071)
chr4 (127-222)||(38836814-38836909)
chr4 (128-243)||(45421628-45421743)
chr4 (199-243)||(4946678-4946722)
chr4 (310-454)||(53708286-53708430)
[»] chr2 (7 HSPs)
chr2 (176-243)||(19933896-19933963)
chr2 (332-389)||(15521178-15521235)
chr2 (317-452)||(3981890-3982025)
chr2 (171-272)||(5849190-5849290)
chr2 (135-243)||(3981709-3981817)
chr2 (382-454)||(13911840-13911912)
chr2 (191-243)||(26370495-26370547)
[»] chr8 (1 HSPs)
chr8 (310-454)||(26381448-26381592)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 43472238 - 43471774
Alignment:
Q  1 ttattcttttctttggttatatttaattttcttatgtaaacaatatcaattcaagtcaatttattagtgaaacatagaaggtta----ccaccttgcatg 96  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    ||||||| ||||    
T  43472238 ttattcatttctttggttatatttaatttccttatgtaaacaatatcaattcaagtcaatctattagtgaaacatagaaggttaattaccaccttccatg 43472139  T
Q  97 tactttggaatcnnnnnnn-agaggaaaatatttataatattt-cattaattaatatgtgctcaatgtattatagtatttcaaccaaaatttagaaacta 194  Q
    ||||||||||||        | ||||||||| |||||| |||| ||||||||||||||||||||||| |||||| |  ||||||||||| || |||||||    
T  43472138 tactttggaatcttttttttacaggaaaatacttataacattttcattaattaatatgtgctcaatgcattataatgattcaaccaaaacttggaaacta 43472039  T
Q  195 gttgataatgtggctgccttagctaattcataagcagcctcatttgctttgttctctcacaaactctacacttgagtttacttagtaacacctaaacaaa 294  Q
      ||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  43472038 aatgataatgtggctgccttagctaattcataagcagcctcatttacttgtttc-ctcacaaactctacacttgagtttacttagtaagacctaaacaaa 43471940  T
Q  295 gatctacaagcctggatgatattaccaaattcagtagcatcatgttttgtggataaaaagctatcaaccaccctctttgtatcaagttcaaaatcgattg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||||||||||    
T  43471939 gatctacaagcctggatgatattaccaaattcagtagcatcatgtttagtggataaaaagctaccaactaccctctttgtatcaagctcaaaatcgattg 43471840  T
Q  395 gaccaagattaagaacatggacccattccaatgcagat--aaaaaaccaagagcctctcctacaat 458  Q
    |||||| |||||||||||||||||||||||| | ||||  |||||||||||||| |||||||||||    
T  43471839 gaccaatattaagaacatggacccattccaaagtagataaaaaaaaccaagagcttctcctacaat 43471774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 26418774 - 26418817
Alignment:
Q  200 taatgtggctgccttagctaattcataagcagcctcatttgctt 243  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  26418774 taatgtggctgccttagctaattcatgagcaacctcatttgctt 26418817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 32108506 - 32108463
Alignment:
Q  200 taatgtggctgccttagctaattcataagcagcctcatttgctt 243  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  32108506 taatgtggctgccttagctaattcatgagcaacctcatttgctt 32108463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 5714836 - 5714785
Alignment:
Q  176 aaccaaaatttagaaactagttgataatgtggctgccttagctaattcataa 227  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||| ||||||    
T  5714836 aaccaaaatatagaaactagttgttaatgtgtccgccttagctaactcataa 5714785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 452
Target Start/End: Complemental strand, 47142637 - 47142502
Alignment:
Q  317 taccaaattcagtagcatcatgttttgtggataaaaagctatcaaccaccctctttgtatcaagttcaaaatcgattggaccaagattaagaacatggac 416  Q
    ||||||| || ||||||||||||| ||  ||||| ||||| ||||| || || || | |||||| |||||||| || || ||||| | ||||| | | ||    
T  47142637 taccaaactctgtagcatcatgttgtgcagataagaagctgtcaacaactcttttcgcatcaagctcaaaatcaataggtccaagttgaagaagacgaac 47142538  T
Q  417 ccattccaatgcagataaaaaaccaagagcctctcc 452  Q
    |||||| || |||||||  ||||||||||| |||||    
T  47142537 ccattctaaagcagatagtaaaccaagagcttctcc 47142502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 278 - 454
Target Start/End: Original strand, 42595877 - 42596051
Alignment:
Q  278 agtaacacctaaacaaagatctacaagcctggatgatattaccaaattcagtagcatcatgttttgtggataaaaagctatcaaccaccctctttgtatc 377  Q
    ||||| |||||||||||| |||||||||||| || |||  |||||||| | ||||||||||||| ||||||||||||||||| || ||||| |||  |||    
T  42595877 agtaagacctaaacaaagttctacaagcctgaatcata--accaaattaaatagcatcatgtttagtggataaaaagctatcgactacccttttttcatc 42595974  T
Q  378 aagttcaaaatcgattggaccaagattaagaacatggacccattccaatgcagataaaaaaccaagagcctctccta 454  Q
    ||| |||||||  |||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||    
T  42595975 aagctcaaaattaattgtaccaagattaagaacgtggacccattccaaagcagataaaaaaccaaaagcttctccta 42596051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 32073593 - 32073636
Alignment:
Q  200 taatgtggctgccttagctaattcataagcagcctcatttgctt 243  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  32073593 taatgtggctgccttagctaattcatgagcaacctcatttgctt 32073636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 42595642 - 42595717
Alignment:
Q  197 tgataatgtggctgccttagctaattcataagcagcctcatttgctttgttctctcacaaactctacacttgagttt 273  Q
    |||||||||||| ||||||| ||||| || || ||| ||||||||||   || ||||||||||||||||||||||||    
T  42595642 tgataatgtggccgccttagttaatttatgaggagcttcatttgcttgtctc-ctcacaaactctacacttgagttt 42595717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 17058781 - 17058847
Alignment:
Q  177 accaaaatttagaaactagttgataatgtggctgccttagctaattcataagcagcctcatttgctt 243  Q
    |||||||||| |||||||| ||| |||||||  ||||| ||||| |||| |||| ||||||||||||    
T  17058781 accaaaatttggaaactagctgacaatgtggtcgcctttgctaactcatgagcaacctcatttgctt 17058847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 29526908 - 29526865
Alignment:
Q  200 taatgtggctgccttagctaattcataagcagcctcatttgctt 243  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  29526908 taatgtggctgccttagctaattcatgagcaacctcatttgctt 29526865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 7097405 - 7097449
Alignment:
Q  199 ataatgtggctgccttagctaattcataagcagcctcatttgctt 243  Q
    |||||||||||||||||||||| |||| |||| ||||||||||||    
T  7097405 ataatgtggctgccttagctaactcatgagcaacctcatttgctt 7097449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 13597111 - 13597025
Alignment:
Q  135 atttcattaattaatatgtgctcaatgtattatagtatttcaaccaaaatttagaaactagttgataatgtggctgccttagctaat 221  Q
    |||||||| ||||| ||||| ||||| || | | ||||||| | |||||| ||||||||||||||  || |||| ||||||||||||    
T  13597111 atttcattgattaaaatgtgttcaatataatttggtatttctaacaaaatctagaaactagttgaggatatggccgccttagctaat 13597025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 454
Target Start/End: Original strand, 11567694 - 11567823
Alignment:
Q  325 tcagtagcatcatgttttgtggataaaaagctatcaaccaccctctttgtatcaagttcaaaatcgattggaccaagattaagaacatggacccattcca 424  Q
    ||||| |||||||| ||||| ||||| ||  ||||||| ||| | || | ||| |  |||||||| || ||||||||||||||  | || |||||||| |    
T  11567694 tcagttgcatcatgatttgtcgataagaaattatcaacaacctttttcgcatccatctcaaaatccataggaccaagattaagctcgtgaacccattcta 11567793  T
Q  425 atgcagataaaaaaccaagagcctctccta 454  Q
      |||||||| ||||||||||| |||||||    
T  11567794 gagcagataataaaccaagagcttctccta 11567823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 47300403 - 47300343
Alignment:
Q  124 atatttataatatttcattaattaatatgtgctcaatgtattatagtatttcaaccaaaat 184  Q
    |||||||||||||||||||||| || | ||| |||||  | | ||||||||||||||||||    
T  47300403 atatttataatatttcattaatcaaaacgtgttcaatacaatttagtatttcaaccaaaat 47300343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 15950880 - 15950837
Alignment:
Q  200 taatgtggctgccttagctaattcataagcagcctcatttgctt 243  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  15950880 taatgtggctgccttagctaattcatgagcaacctcatttgctt 15950837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 454
Target Start/End: Original strand, 19110468 - 19110612
Alignment:
Q  310 atgatattaccaaattcagtagcatcatgttttgtggataaaaagctatcaaccaccctctttgtatcaagttcaaaatcgattggaccaagattaagaa 409  Q
    |||||||| || || ||||| |||||||| ||||| ||||| ||  ||||||| ||| | || | ||| |  |||||||| || ||||||||||||||      
T  19110468 atgatatttccgaactcagttgcatcatgatttgtcgataagaaattatcaacaacctttttcgcatccatctcaaaatccataggaccaagattaagct 19110567  T
Q  410 catggacccattccaatgcagataaaaaaccaagagcctctccta 454  Q
    | || |||||||| |  |||||||| ||||||||||| |||||||    
T  19110568 cgtgaacccattctagagcagataataaaccaagagcttctccta 19110612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 47783071 - 47783028
Alignment:
Q  200 taatgtggctgccttagctaattcataagcagcctcatttgctt 243  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  47783071 taatgtggctgccttagctaattcatgagcaacctcatttgctt 47783028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 38836909 - 38836814
Alignment:
Q  127 tttataatatttcattaattaatatgtgctcaatgtattatagtatttcaaccaaaatttagaaactagttgataatgtggctgccttagctaatt 222  Q
    ||||||| ||||||||||| || ||||| |||||  ||| |||||| | ||||||||| |||||| ||| |||| ||| ||| |||||| ||||||    
T  38836909 tttataacatttcattaatcaaaatgtgttcaatacattctagtatattaaccaaaatctagaaattagctgattatgaggccgccttaactaatt 38836814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 45421743 - 45421628
Alignment:
Q  128 ttataatatttcattaattaatatgtgctcaatgtattatagtatttcaaccaaaatttagaaactagttgataatgtggctgccttagctaattcataa 227  Q
    |||||| ||||||||||| || ||||| |||||  ||||| |||| | ||||| ||| | |||||||  |||| ||| ||| ||||||||||||||||      
T  45421743 ttataacatttcattaatcaaaatgtgttcaatacattatggtatattaaccagaatctggaaactaactgatgatgaggccgccttagctaattcatgg 45421644  T
Q  228 gcagcctcatttgctt 243  Q
    ||| ||||||| ||||    
T  45421643 gcaacctcattcgctt 45421628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 4946678 - 4946722
Alignment:
Q  199 ataatgtggctgccttagctaattcataagcagcctcatttgctt 243  Q
    |||||||||||| ||||||||| |||| |||| ||||||||||||    
T  4946678 ataatgtggctgtcttagctaactcatgagcaacctcatttgctt 4946722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 454
Target Start/End: Original strand, 53708286 - 53708430
Alignment:
Q  310 atgatattaccaaattcagtagcatcatgttttgtggataaaaagctatcaaccaccctctttgtatcaagttcaaaatcgattggaccaagattaagaa 409  Q
    |||||||| || || ||||| |||||||| ||||| ||||| ||  ||||||| ||| | || | ||| |  |||||||| || ||||||||||||||      
T  53708286 atgatatttccgaactcagttgcatcatgatttgtcgataagaaattatcaacaacctttttcgcatccatctcaaaatccataggaccaagattaagct 53708385  T
Q  410 catggacccattccaatgcagataaaaaaccaagagcctctccta 454  Q
    | || |||||||  |  |||||||| ||||||||||| |||||||    
T  53708386 cgtgaacccattgtagagcagataataaaccaagagcttctccta 53708430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 19933896 - 19933963
Alignment:
Q  176 aaccaaaatttagaaactagttgataatgtggctgccttagctaattcataagcagcctcatttgctt 243  Q
    ||||||||| | ||||||||  ||||||||||| ||||| ||||||||||  ||||||||||||||||    
T  19933896 aaccaaaatatggaaactagccgataatgtggcagcctttgctaattcatgggcagcctcatttgctt 19933963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 15521235 - 15521178
Alignment:
Q  332 catcatgttttgtggataaaaagctatcaaccaccctctttgtatcaagttcaaaatc 389  Q
    |||||||||||| ||| ||||||||||||||||| ||||||| | |||| ||||||||    
T  15521235 catcatgttttggggacaaaaagctatcaaccactctctttgcagcaagctcaaaatc 15521178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 452
Target Start/End: Original strand, 3981890 - 3982025
Alignment:
Q  317 taccaaattcagtagcatcatgttttgtggataaaaagctatcaaccaccctctttgtatcaagttcaaaatcgattggaccaagattaagaacatggac 416  Q
    ||||||| || ||||||||||||| ||  ||||| ||||| ||||| || || || |  ||||| || ||||| ||||| ||||| | ||||| ||| ||    
T  3981890 taccaaactctgtagcatcatgttgtgcagataagaagctgtcaacaactcttttcgcgtcaagctcgaaatcaattggtccaagttgaagaagatgaac 3981989  T
Q  417 ccattccaatgcagataaaaaaccaagagcctctcc 452  Q
    |||||| || |||||||  ||||||||||| |||||    
T  3981990 ccattctaaagcagatagtaaaccaagagcttctcc 3982025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 5849290 - 5849190
Alignment:
Q  171 atttcaaccaaaatttagaaactagttgataatgtggctgccttagctaattcataagcagcctcatttgctttgttctctcacaaactctacacttgag 270  Q
    ||||| |||||||| |  |||||||||||  |||||||||||| |||||||  || ||| |||||||||| |||||   ||||||||||| ||||| |||    
T  5849290 atttctaccaaaatctgaaaactagttgaggatgtggctgcctcagctaatctatgagctgcctcatttg-tttgtctcctcacaaactcaacactagag 5849192  T
Q  271 tt 272  Q
    ||    
T  5849191 tt 5849190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 3981709 - 3981817
Alignment:
Q  135 atttcattaattaatatgtgctcaatgtattatagtatttcaaccaaaatttagaaactagttgataatgtggctgccttagctaattcataagcagcct 234  Q
    ||||||||||| || ||||| |||||  ||| | |||| | ||||| ||| | |||||||| |||| ||| ||| ||||||||||||||||  ||| |||    
T  3981709 atttcattaatcaaaatgtgttcaatacattctggtatattaaccagaatctggaaactagctgatgatgaggccgccttagctaattcatgggcaacct 3981808  T
Q  235 catttgctt 243  Q
    |||| ||||    
T  3981809 cattcgctt 3981817  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 454
Target Start/End: Original strand, 13911840 - 13911912
Alignment:
Q  382 tcaaaatcgattggaccaagattaagaacatggacccattccaatgcagataaaaaaccaagagcctctccta 454  Q
    |||||||| || ||||||||||||||  | || |||||||| |  |||||||| ||||||||||| |||||||    
T  13911840 tcaaaatccataggaccaagattaagctcgtgaacccattctagagcagataataaaccaagagcttctccta 13911912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 26370547 - 26370495
Alignment:
Q  191 actagttgataatgtggctgccttagctaattcataagcagcctcatttgctt 243  Q
    ||||||||| |||  ||||||||||||||||| || |||| ||||||||||||    
T  26370547 actagttgacaataaggctgccttagctaatttatgagcaacctcatttgctt 26370495  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 454
Target Start/End: Original strand, 26381448 - 26381592
Alignment:
Q  310 atgatattaccaaattcagtagcatcatgttttgtggataaaaagctatcaaccaccctctttgtatcaagttcaaaatcgattggaccaagattaagaa 409  Q
    |||||||| || || ||||| |||||||| ||||| ||||| ||  ||||||| ||| | || | ||| |  |||||||| || ||||||||||||||      
T  26381448 atgatatttccgaactcagttgcatcatgatttgtcgataagaaattatcaacaacctttttcgcatccatctcaaaatccataggaccaagattaagct 26381547  T
Q  410 catggacccattccaatgcagataaaaaaccaagagcctctccta 454  Q
    | || |||||||| |  |||||||| ||| ||||||| |||||||    
T  26381548 cgtgaacccattctagagcagataataaatcaagagcttctccta 26381592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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