View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14112_low_7 (Length: 445)
Name: NF14112_low_7
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14112_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 32272403 - 32272830
Alignment:
| Q |
1 |
aaggtgtagaatttatattatattaaactaataatcgaaggtgtttataacaaaaaagaaaacaacgaacaaacacaaggtattgagctccttaagctga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272403 |
aaggtgtagaatttatattatattaaactaataatcgaaggtgtttataacaaaaaagaaaacaacgaacaaacacaaggtattgagctccttaagctga |
32272502 |
T |
|
| Q |
101 |
caatgcgtaacaaaaagtaattacaacaaggtatgccgactaccttgtttaccgattccacccatgctcaaagttgcagcattgcacaccttgccttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32272503 |
caatgcgtaacaaaaagtaattacaacaaggtatgccgactaccttgtttaccgattccacccatgctcaaagtggcagcattgcacaccttgccttcaa |
32272602 |
T |
|
| Q |
201 |
ggacggtgttgggaggctcctccatacttgagtcctcatctcttcaagctcttttcgactctgagtcctcgcttgttcaagctccacttgattttgagtc |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272603 |
ggacggtgttgagaggctcctccatacttgagtcctcatctcttcaagctcttttcgactctgagtcctcgcttgttcaagctccacttgattttgagtc |
32272702 |
T |
|
| Q |
301 |
tgcatctgctgactcaattgttgtattagtgtcaccatttcaggggtcatctccacgttacgagaaccgccttctccatcaatagatcgttcataaatac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32272703 |
tgcatctgctgactcaattgttgtattagtgtcaccatttcaggggtcatctccacgttacgagaaccgccttctccatcaatagatcgttcataaatac |
32272802 |
T |
|
| Q |
401 |
atctattgtgtatcaagttggaggacat |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
32272803 |
atctattgtgtatcaagttggaggacat |
32272830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 231 - 424
Target Start/End: Original strand, 24551538 - 24551730
Alignment:
| Q |
231 |
agtcctcatctcttcaagctcttttcgactctgagtcctcgcttgttcaagctccacttgattttgagtctgcatctgctgactcaattgttgtattagt |
330 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | | |
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| T |
24551538 |
agtcctcatctcttgaagttctttttgactctgagtcctcgcttgttcaagctccacttgattttgagattgcatctgttgactcaattgttgtatcatt |
24551637 |
T |
|
| Q |
331 |
gtcaccatttcaggggtcatctccacgttacgagaaccgccttctccatcaatagatcgttcataaatacatctattgtgtatcaagttggagg |
424 |
Q |
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| ||||||||||| | ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |
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| T |
24551638 |
gcaaccatttcaggtg-catctccacattacgagagccgccttctccatcaatcgatcgttcataaatacatctattgtgtaccaaattggagg |
24551730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 32809089 - 32809140
Alignment:
| Q |
146 |
tgtttaccgattccacccatgctcaaagttgcag-cattgcacaccttgcct |
196 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| | ||||||||||||||| |
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|
| T |
32809089 |
tgtttaccgattccacccatgcccaaggttgcagcctttgcacaccttgcct |
32809140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 229 - 424
Target Start/End: Complemental strand, 13574322 - 13574127
Alignment:
| Q |
229 |
tgagtcctcatctcttcaagctcttttcgactctgagtcctcgcttgttcaagctccacttgattttgagtctgcatctgctgactcaattgttgtatta |
328 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |
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| T |
13574322 |
tgagtcctcatctcttgaagttctttttgacttttagtcctcgcttgttcaagctccacttgattttgagattgcatctgttgactcaattgttgtatca |
13574223 |
T |
|
| Q |
329 |
gtgtcaccatttcaggggtcatctccacgttacgagaaccgccttctccatcaatagatcgttcataaatacatctattgtgtatcaagttggagg |
424 |
Q |
| |
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||| |||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
13574222 |
gtgccaccatttcaggtgtcatctccacattacgagagccgccgtctccatcaatcgatcgttcataaatacatctattgtgtaccaagttggagg |
13574127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 229 - 424
Target Start/End: Complemental strand, 13900226 - 13900031
Alignment:
| Q |
229 |
tgagtcctcatctcttcaagctcttttcgactctgagtcctcgcttgttcaagctccacttgattttgagtctgcatctgctgactcaattgttgtatta |
328 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| | |
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| T |
13900226 |
tgagtcctcatctcttgaagttctttttgactctgagtcctcgcttgttcaagctccacttgattttgagattgcatatgttgactcaattgttgtatca |
13900127 |
T |
|
| Q |
329 |
gtgtcaccatttcaggggtcatctccacgttacgagaaccgccttctccatcaatagatcgttcataaatacatctattgtgtatcaagttggagg |
424 |
Q |
| |
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|| |||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| |
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| T |
13900126 |
ttgccaccatttcaggtgtcatctccacattacgagagccgccttctccatcaatcgatcgttcataaatacatctattgtttagcaagttggagg |
13900031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 229 - 424
Target Start/End: Complemental strand, 19139108 - 19138913
Alignment:
| Q |
229 |
tgagtcctcatctcttcaagctcttttcgactctgagtcctcgcttgttcaagctccacttgattttgagtctgcatctgctgactcaattgttgtatta |
328 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || ||||| | |
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| T |
19139108 |
tgagtcctcatctcttgaagttctttttgactctgagtcctcgcttgttcaagctccacttgattttgagatttcatctgctgactcatatgctgtatca |
19139009 |
T |
|
| Q |
329 |
gtgtcaccatttcaggggtcatctccacgttacgagaaccgccttctccatcaatagatcgttcataaatacatctattgtgtatcaagttggagg |
424 |
Q |
| |
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|| |||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
19139008 |
ttgccaccatttcaggtgtcatctccacattacgagagccgccttctccatcaatcgatcgttcataaatacatctattgtgtaccaagttggagg |
19138913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 261 - 424
Target Start/End: Complemental strand, 23965194 - 23965031
Alignment:
| Q |
261 |
ctgagtcctcgcttgttcaagctccacttgattttgagtctgcatctgctgactcaattgttgtattagtgtcaccatttcaggggtcatctccacgtta |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||| |||||| |||||||||| |||| |||||||||||| ||||||||| | ||| |
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|
| T |
23965194 |
ctgagtcctcgcttgttcaagctccacttgtttttgagattgcatctgttgactcgattgttgtatcagtgccaccatttcaggtgtcatctccgcatta |
23965095 |
T |
|
| Q |
361 |
cgagaaccgccttctccatcaatagatcgttcataaatacatctattgtgtatcaagttggagg |
424 |
Q |
| |
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||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
23965094 |
cgagagccgccatctccatcaatcgatcgttcataaatacatctattgtgtaccaagttggagg |
23965031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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