View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14112_low_9 (Length: 360)
Name: NF14112_low_9
Description: NF14112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14112_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 19077881 - 19077549
Alignment:
| Q |
19 |
ggatttgagcaggatgttctataactagtggaggaatccttgccggtgaaaagggtatgtagataagtattcatggaatttcccttgttcttgctaaact |
118 |
Q |
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| T |
19077881 |
ggatttgagcaggatgttctataactagtggaggaatccttgccggtgaaaaggttatgtagataagtattcatggaatttcccttgttcttgctaaact |
19077782 |
T |
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| Q |
119 |
tgaattataataatatttgtaattgatgtttagaaccaaaaattaactgattcatctgactataaagagtcattatctaaacgtgaatttctatcacatt |
218 |
Q |
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| T |
19077781 |
tgaattataataatatttgtaattcatgtttagaaccaaaaattaactgattcatctgactataaagagttattatctaaacgtgaatttctatcacatt |
19077682 |
T |
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| Q |
219 |
ggttgtaattcacacttagcaaggacaaggaaaagttcttgaataatttt-cccatactcattttatcggaaatgattctccattatttatagaactttc |
317 |
Q |
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| T |
19077681 |
ggttgtaattcacgcttagcaaggacaaggaaaagttcttgaataattttccccatactcattttatcggaaaggattctccattatttatagaactttc |
19077582 |
T |
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| Q |
318 |
ctactttaaagctcattctaactattccctttg |
350 |
Q |
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| T |
19077581 |
ctactttaaagctcattctaactatttcctttg |
19077549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 19079605 - 19079274
Alignment:
| Q |
20 |
gatttgagcaggatgttctataactagtggaggaatccttgccggtgaaaagggtatgtagataagtattcatggaatttcccttgttcttgctaaactt |
119 |
Q |
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|||||||||| || ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| | ||||| ||||||||||| |
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| T |
19079605 |
gatttgagcaagaagttctatcactagtggaggaatcctagccggtgaaaagggtatgtagatatgtatttctggaattttctttgttgttgctaaactt |
19079506 |
T |
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| Q |
120 |
gaattataataatatttgtaattgatgtttagaaccaaaaattaactgattcatctgactataaagagtcattatctaaacgtgaatttctatcacattg |
219 |
Q |
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| T |
19079505 |
gaattataataacatttataattcatgtttagaaccaaaaatgaactgattcatctgactatagagagtcattatctaaacgtgaatttctatcacattg |
19079406 |
T |
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| Q |
220 |
gttgtaattcacacttagcaaggacaaggaaaagttcttgaataatttt-cccatactcattttatcggaaatgattctccattatttatagaactttcc |
318 |
Q |
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|||||||||||| ||||||||||||||| | || ||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19079405 |
gttgtaattcacgcttagcaaggacaagcacaaattcttgaattattttccccatactcattttatcggaaaagattctccattatttatagaactttcc |
19079306 |
T |
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| Q |
319 |
tactttaaagctcattctaactattccctttg |
350 |
Q |
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| T |
19079305 |
tactttaaagctcattctaactattccctttg |
19079274 |
T |
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