View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14113_high_4 (Length: 384)
Name: NF14113_high_4
Description: NF14113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14113_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 374
Target Start/End: Complemental strand, 42961722 - 42961349
Alignment:
| Q |
9 |
cttcttccattgctgggcttgatttgagtatgtacaaaaatgttacacttcaacacgaagtggacttaatag--------attaggctgtatcactgtat |
100 |
Q |
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| T |
42961722 |
cttcttccattgctgggcttgatttgagtatgtacaaaaatgttacacttcaacacgaagtggacttaataggcttccagattaggctgtatcactgtat |
42961623 |
T |
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| Q |
101 |
tgatgtgggttagttcaacttagttggactttggaggttccttacttcttctttcggcccacgaaatcattttggtggagttcaaacaatgctgatcgta |
200 |
Q |
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| T |
42961622 |
tgatgtgggttagttcaacttagttggactttggaggttccttacttcttctttcggcccacgaaatcattttggtggagttcaaacaatgctgatcgta |
42961523 |
T |
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| Q |
201 |
tttcaggcaatggtggggcactaggaacaagattcatcccatcttttttctgcaaaataatgttatccttagtaacagtactggtaacaacgatttaaac |
300 |
Q |
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| T |
42961522 |
tttcaggcaatggtggggcactaggaacaggattcatcccatcttttttctgcaaaataatgttatccttagtaacagtactggtaacaacgatttaaac |
42961423 |
T |
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| Q |
301 |
attaaaaaatgacaagcaagcaatgatttaaaattgatggtcaaatgtgtgtaatatactatgcctgttctgtg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42961422 |
attaaaaaatgacaagcaagcaatgatttaaaattgatggtcaaatgtatgtaatatactatgcctgttctgtg |
42961349 |
T |
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