View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14113_low_2 (Length: 608)

Name: NF14113_low_2
Description: NF14113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14113_low_2
NF14113_low_2
[»] chr2 (8 HSPs)
chr2 (191-592)||(13485634-13486036)
chr2 (191-592)||(13492073-13492476)
chr2 (284-592)||(13509395-13509703)
chr2 (14-163)||(13486066-13486215)
chr2 (284-588)||(13515157-13515459)
chr2 (373-573)||(13501369-13501569)
chr2 (372-404)||(13520769-13520801)
chr2 (369-413)||(13554692-13554736)
[»] chr8 (2 HSPs)
chr8 (17-125)||(14958086-14958195)
chr8 (42-95)||(9293239-9293293)
[»] chr6 (3 HSPs)
chr6 (35-119)||(12155378-12155461)
chr6 (18-107)||(33908575-33908665)
chr6 (25-122)||(9627123-9627221)
[»] chr7 (1 HSPs)
chr7 (58-117)||(15077096-15077156)
[»] chr3 (2 HSPs)
chr3 (36-95)||(11630110-11630170)
chr3 (17-95)||(8543101-8543181)
[»] chr5 (3 HSPs)
chr5 (35-95)||(7237076-7237137)
chr5 (17-116)||(38755695-38755792)
chr5 (55-107)||(41715151-41715204)
[»] chr1 (3 HSPs)
chr1 (35-119)||(7440921-7441006)
chr1 (42-95)||(6397666-6397720)
chr1 (59-107)||(28666886-28666935)


Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 191 - 592
Target Start/End: Complemental strand, 13486036 - 13485634
Alignment:
Q  191 tgaatagatgaagtattattataatttcttgaagggaggtacacatatgacttacaatctcaaacttcagcaaacggaaa-tagaaaattacatttggca 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13486036 tgaatagatgaagtattattataatttcttgaagggaggtacacatatgacttacaatctcaaacttcagcaaacggaaaatagaaaattacatttggca 13485937  T
Q  290 accaaatcaagcccacatgatataataaaatgcatcacaacacaccatgtataaagcaagcaagcaattagctatatgctttagtaatcaggatttgcca 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13485936 accaaatcaagcccacatgatataataaaatgcatcacaacacaccatgtataaagcaagcaagcaattagctatatgctttagtaatcaggatttgcca 13485837  T
Q  390 aaacgtaaccttcaagagccttgaaaagaccatcacccctagctttgccacccttgatttcctcttcactaggtgtagcatcacctttggtgaagtattt 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13485836 aaacgtaaccttcaagagccttgaaaagaccatcacccctagctttgccacccttgatttcctcttcactaggtgcagcatcacctttggtgaagtattt 13485737  T
Q  490 cacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaaggagatcttctccactgtgtctggaagtccaccaccaccaact 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13485736 cacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaaggagatcttctccactgtgtctggaagtccaccaccaccaact 13485637  T
Q  590 atg 592  Q
    |||    
T  13485636 atg 13485634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 191 - 592
Target Start/End: Complemental strand, 13492476 - 13492073
Alignment:
Q  191 tgaatagatgaagtattattataatttcttgaagggaggtacacatat--gacttacaatctcaaacttcagcaaacggaaatagaaaattacatttggc 288  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||||||||||||| | ||||||||||||||||||| |    
T  13492476 tgaatagatgaagtattattataatttattgaaaggaggtacacatatatgacttacaatctcaaacttcagcaaaagaaaatagaaaattacatttgtc 13492377  T
Q  289 aaccaaatcaagcccacatgatataataaaatgcatcacaacacaccatgtataaagcaagcaagcaattagctatatgctttagtaatcaggatttgcc 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13492376 aaccaaatcaagcccacatgatataataaaatgcatcacaacacaccgtgtataaagcaagcaagcaattagctatatgctttagtaatcaggatttgcc 13492277  T
Q  389 aaaacgtaaccttcaagagccttgaaaagaccatcacccctagctttgccacccttgatttcctcttcactaggtgtagcatcacctttggtgaagtatt 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13492276 aaaacgtaaccttcaagagccttgaaaagaccatcacccctagcttttccacccttgatttcctcttcactaggtgcagcatcacctttggtgaagtatt 13492177  T
Q  489 tcacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaaggagatcttctccactgtgtctggaagtccaccaccaccaac 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13492176 tcacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaaggagatcttctccactgtgtctggaagtccaccaccaccaac 13492077  T
Q  589 tatg 592  Q
    ||||    
T  13492076 tatg 13492073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 284 - 592
Target Start/End: Complemental strand, 13509703 - 13509395
Alignment:
Q  284 ttggcaaccaaatcaagcccacatgatataataaaatgcatcacaacacaccatgtataaagcaagcaagcaattagctatatgctttagtaatcaggat 383  Q
    |||||||||||||||||| ||| ||||| |||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13509703 ttggcaaccaaatcaagcacacttgatacaataaaatgcattacaacacgccatgtataaagcaagtaagcaattagctatatgctttagtaatcaggat 13509604  T
Q  384 ttgccaaaacgtaaccttcaagagccttgaaaagaccatcacccctagctttgccacccttgatttcctcttcactaggtgtagcatcacctttggtgaa 483  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||  ||||| |||||||||||| |||| | ||||||||||||||||    
T  13509603 ttgccaaaacataaccttcaagagctttgaaaagaccatcacccctagctttgccattcttgagttcctcttcacttggtgcaacatcacctttggtgaa 13509504  T
Q  484 gtatttcacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaaggagatcttctccactgtgtctggaagtccaccacca 583  Q
    |||||||||| ||||||||||||||| |||||||| ||| |||||||| ||||||| |||||| || |||||||| | |||||||||||| |||  ||||    
T  13509503 gtatttcacactaagctttgcaatggttcctccatttggtcctgcagataatttagcctcaaatgaaatcttctctattgtgtctggaagcccaaaacca 13509404  T
Q  584 ccaactatg 592  Q
    |||||||||    
T  13509403 ccaactatg 13509395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 13486215 - 13486066
Alignment:
Q  14 cataggtaggtacaattgattgaactgtgttaaaaaatattgtatgttcattgttttttctttcgttctcttatttaatcttcagttactagttttcgtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13486215 cataggtaggtacaattgattgaactgtgttaaaaaatattgtatgttcattgttttttctttcgttctcttatttaatcttcagttattagttttcgtt 13486116  T
Q  114 ctaacaataaccttaaaattcgaaagccacgtataaatagttgcatacaa 163  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13486115 ctaacaataaccttaaaattcgaaagccacatataaatagttgcatacaa 13486066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 284 - 588
Target Start/End: Complemental strand, 13515459 - 13515157
Alignment:
Q  284 ttggcaaccaaatcaagcccacatgatataataaaatgcatcacaacacaccatgtataaagcaagcaagcaattagctatatgctttagt---aatcag 380  Q
    |||||| |||||| |||| |||  ||||||||||||||  |||||||||| ||| |||| ||||||||  ||     ||||||||||||||   ||||||    
T  13515459 ttggcatccaaattaagcacactagatataataaaatgtgtcacaacacaacatttatagagcaagcacaca-----ctatatgctttagttgtaatcag 13515365  T
Q  381 gatttgccaaaacgtaaccttcaagagccttgaaaagaccatcacccctagctttgccacccttgatttcctcttcactaggtgtagcatcacctttggt 480  Q
    |||| ||||||  |||||| || | |||||||||||||||||||||| |||||||||||| ||||| |||||||||||| || ||| |||| ||||| ||    
T  13515364 gattagccaaacagtaaccctctatagccttgaaaagaccatcacccttagctttgccactcttgagttcctcttcacttggagtaacatctccttttgt 13515265  T
Q  481 gaagtatttcacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaaggagatcttctccactgtgtctggaagtccacca 580  Q
    ||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| |||||| || |||||||| | |||||||||||| ||| ||    
T  13515264 gaagtatttcacattaagctttgcaatggatcctccatttggacctgcagacaatttagcctcaaatgaaatcttctctattgtgtctggaaggccaaca 13515165  T
Q  581 ccaccaac 588  Q
    || |||||    
T  13515164 cctccaac 13515157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 373 - 573
Target Start/End: Complemental strand, 13501569 - 13501369
Alignment:
Q  373 gtaatcaggatttgccaaaacgtaaccttcaagagccttgaaaagaccatcacccctagctttgccacccttgatttcctcttcactaggtgtagcatca 472  Q
    |||||||||||| ||||||  |||||| ||||| ||||||||||||||||||||| |||||||||||| ||||| |||||||||||| || ||| ||||     
T  13501569 gtaatcaggattagccaaacagtaaccctcaagggccttgaaaagaccatcacccttagctttgccactcttgagttcctcttcacttggagtaacatct 13501470  T
Q  473 cctttggtgaagtatttcacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaaggagatcttctccactgtgtctggaa 572  Q
    ||||| || |||||||||||| |||| ||||||||||||||||||| ||| |||||||||| |||||  ||||| || |||||||| |||||||||||||    
T  13501469 ccttttgtaaagtatttcacactaagttttgcaatggatcctccatttggacctgcagacagtttagcttcaaatgaaatcttctctactgtgtctggaa 13501370  T
Q  573 g 573  Q
    |    
T  13501369 g 13501369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 13520801 - 13520769
Alignment:
Q  372 agtaatcaggatttgccaaaacgtaaccttcaa 404  Q
    ||||||||||||||||||||| |||||||||||    
T  13520801 agtaatcaggatttgccaaaaggtaaccttcaa 13520769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 13554736 - 13554692
Alignment:
Q  369 tttagtaatcaggatttgccaaaacgtaaccttcaagagccttga 413  Q
    |||| |||||||||||||||||||||||||| ||||  |||||||    
T  13554736 tttaataatcaggatttgccaaaacgtaaccctcaatggccttga 13554692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 14958086 - 14958195
Alignment:
Q  17 aggtaggtacaattgattgaactgtgttaaaaaatattgtatgttcattgttttt-tctttcgttctcttatttaatcttcagttactagttttcgttct 115  Q
    ||||||| |||||||   |||||||||||| ||||||  |||||||||||| ||  |||||||||||||| |||||||||  |||||||||| | |||||    
T  14958086 aggtaggcacaattggccgaactgtgttaacaaatatcctatgttcattgtcttcctctttcgttctcttgtttaatcttttgttactagttgttgttct 14958185  T
Q  116 aacaataacc 125  Q
    ||||||||||    
T  14958186 aacaataacc 14958195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 9293293 - 9293239
Alignment:
Q  42 gttaaaaaatattgtatgttcattgttttt-tctttcgttctcttatttaatctt 95  Q
    ||||| ||||||||| |||||||||| ||| ||||| ||||||||||||||||||    
T  9293293 gttaacaaatattgtgtgttcattgtctttctcttttgttctcttatttaatctt 9293239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 12155461 - 12155378
Alignment:
Q  35 gaactgtgttaaaaaatattgtatgttcattgt-tttttctttcgttctcttatttaatcttcagttactagttttcgttctaaca 119  Q
    |||||||||||||||||||||| |||||||||| ||| |||||||||||||||  |||| ||  |||||||||| | |||||||||    
T  12155461 gaactgtgttaaaaaatattgtgtgttcattgtctttctctttcgttctctta--taattttttgttactagttgttgttctaaca 12155378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 33908665 - 33908575
Alignment:
Q  18 ggtaggtacaattgattgaactgtgttaaaaaatattgtatgttcattgttttt-tctttcgttctcttatttaatcttcagttactagtt 107  Q
    |||||| ||||||| | |||||| ||||| ||||||  | |||||||||| ||| ||||||||||||||||||||| ||  ||||||||||    
T  33908665 ggtaggcacaattggtcgaactgcgttaacaaatatcatgtgttcattgtctttctctttcgttctcttatttaatattttgttactagtt 33908575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 9627221 - 9627123
Alignment:
Q  25 acaattgattgaactgtgttaaaaaatattgtatgttcattgttttt-tctttcgttctcttatttaatcttcagttactagttttcgttctaacaata 122  Q
    |||||||  ||||||| ||||| ||||||  | |||||||||| ||| |||||| |||||||||||||||||  ||| |||||| | ||||||| ||||    
T  9627221 acaattggctgaactgggttaacaaatatcatgtgttcattgtgtttctctttcattctcttatttaatcttttgtttctagttgttgttctaaaaata 9627123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 15077156 - 15077096
Alignment:
Q  58 tgttcattgtttttt-ctttcgttctcttatttaatcttcagttactagttttcgttctaa 117  Q
    ||||||||||||||| ||||||||||||||||||||||   |||||||||| |||||||||    
T  15077156 tgttcattgttttttactttcgttctcttatttaatctgttgttactagttgtcgttctaa 15077096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 11630110 - 11630170
Alignment:
Q  36 aactgtgttaaaaaatattgtatgttcattgt-tttttctttcgttctcttatttaatctt 95  Q
    ||||||||||| |||||| ||||| ||||||| ||||||||| ||||||||||||||||||    
T  11630110 aactgtgttaacaaatatcgtatgatcattgtctttttcttttgttctcttatttaatctt 11630170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 8543101 - 8543181
Alignment:
Q  17 aggtaggtacaattgattgaactgtgttaaaaaatattgtatgttcattg--ttttttctttcgttctcttatttaatctt 95  Q
    ||||||| |||||||   |||||| ||||| |||||| ||||||||||||  ||| ||  |||||||||||||||||||||    
T  8543101 aggtaggcacaattggccgaactgcgttaacaaatatcgtatgttcattgtctttctttcttcgttctcttatttaatctt 8543181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 7237137 - 7237076
Alignment:
Q  35 gaactgtgttaaaaaatattgtatgttcattgt-tttttctttcgttctcttatttaatctt 95  Q
    |||||| | ||| |||||| || |||||||||| ||||||||||||||||||||||||||||    
T  7237137 gaactgcggtaacaaatatcgtgtgttcattgtctttttctttcgttctcttatttaatctt 7237076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 38755695 - 38755792
Alignment:
Q  17 aggtaggtacaattgattgaactgtgttaaaaaatattgtatgttcattgttttttctttcgttctcttatttaatcttcagttactagttttcgttcta 116  Q
    ||||||| ||||||||   |||||| |||| |||||| || |||||||   ||| ||||||||||||||||||||||||  |||||||||| | ||||||    
T  38755695 aggtaggcacaattgaccaaactgtattaacaaatatggtgtgttcatc--tttctctttcgttctcttatttaatcttttgttactagttgttgttcta 38755792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 41715151 - 41715204
Alignment:
Q  55 gtatgttcattgttttt-tctttcgttctcttatttaatcttcagttactagtt 107  Q
    ||||||| ||||| ||| ||||||||||||||||||||||||  ||||||||||    
T  41715151 gtatgttaattgtctttctctttcgttctcttatttaatcttttgttactagtt 41715204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 7440921 - 7441006
Alignment:
Q  35 gaactgtgttaaaaaatattgtatgttcattgtttttt-ctttcgttctcttatttaatcttcagttactagttttcgttctaaca 119  Q
    |||||| ||||| |||||| |||| |  |||||||||| |||||||||||||||||||||||  |||||||| | | |||||||||    
T  7440921 gaactgcgttaacaaatatcgtatatatattgttttttactttcgttctcttatttaatcttatgttactagatgttgttctaaca 7441006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 6397720 - 6397666
Alignment:
Q  42 gttaaaaaatattgtatgttcattgtttttt-ctttcgttctcttatttaatctt 95  Q
    ||||| ||||||||||||||| |||| |||| |||| ||||||||||||||||||    
T  6397720 gttaacaaatattgtatgttcgttgtgttttactttggttctcttatttaatctt 6397666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 28666886 - 28666935
Alignment:
Q  59 gttcattgttttt-tctttcgttctcttatttaatcttcagttactagtt 107  Q
    ||||||||| ||| ||||||||||||||||||||||||  ||||||||||    
T  28666886 gttcattgtctttctctttcgttctcttatttaatcttttgttactagtt 28666935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University