View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14113_low_4 (Length: 509)
Name: NF14113_low_4
Description: NF14113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14113_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 7332918 - 7332438
Alignment:
| Q |
18 |
agaagatcctcaaacccagttacaatgagcttcatctcctttctgaaatgatttgtaataaatggaatgtccatcttggatttcttcactatgccaaaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
7332918 |
agaagatcctcaaacccagttacaatgagcttcatatcctttctgaaatgatttgtaattaatggaatgttcatcttggatttcttcagtatgccgaaag |
7332819 |
T |
|
| Q |
118 |
tttcaaaccaccataagtagttgctaatgtggatctctgcatctttaattatttctccagctactgttctccattgcttttcagtttctgttattaactg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7332818 |
tttcaaaccaccataagtagttgctaatgtagatctctgcatcttcaattatttctccagctactgttttccattgcttttcagtttctgttattaactg |
7332719 |
T |
|
| Q |
218 |
aagctgactcaaatccttcaggaaagcatgcagtggaagtagaaggtatatcgaccatctctcttccatgccagaaaataggtccatggccatgctctta |
317 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
7332718 |
aagctgacgcaaatccttcaggaaagcatgcagtggaagtagaaggtatatcgaccatctctcttccatgccagaaaataggtccattgccacgctctta |
7332619 |
T |
|
| Q |
318 |
ttcatcaattgatcaaaacttggagaaggcttattctgcatttggttttgagctgctacagatgtatggacctctctagctggagatctatcctcctctt |
417 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
7332618 |
ttcatcaattgatcaaaacttattgaaggctttttctgcatttggttttgagctgctacagatgtgtggacctctctagctacagatctatcctcctctt |
7332519 |
T |
|
| Q |
418 |
caaatgtaaattgatccagaagacttctactctttgaccttgatttctccattgacgtatggatgtattcggcattttcat |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
7332518 |
caaatgtaaattgatccagaagacttctactctttgaccttgatttctccattgacatatggatgtatttggcattttcat |
7332438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 113 - 303
Target Start/End: Complemental strand, 6820484 - 6820294
Alignment:
| Q |
113 |
aaaagtttcaaaccaccataagtagttgctaatgtggatctctgcatctttaattatttctccagctactgttctccattgcttttcagtttctgttatt |
212 |
Q |
| |
|
|||||| |||||||||| ||||||||| | |||||||||||| |||||||||||||||||| | |||||||||||||| ||||| ||||| ||| | |
|
|
| T |
6820484 |
aaaagtatcaaaccaccttaagtagtttcaaatgtggatctcagcatctttaattatttcttctgctactgttctccagcaattttctgtttcagtttct |
6820385 |
T |
|
| Q |
213 |
aactgaagctgactcaaatccttcaggaaagcatgcagtggaagtagaaggtatatcgaccatctctcttccatgccagaaaataggtcca |
303 |
Q |
| |
|
|| ||||| |||||||| ||||| ||||||||||||| |||||| | || || || ||| |||||||||||||| |||||||| |||| |
|
|
| T |
6820384 |
aattgaagatgactcaagtccttgaggaaagcatgcaatggaagcatgagatagatagacggtctctcttccatgctcgaaaatagctcca |
6820294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University