View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14113_low_8 (Length: 298)
Name: NF14113_low_8
Description: NF14113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14113_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 23302630 - 23302525
Alignment:
| Q |
1 |
atgttttgtggacggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgattggctttggaggcttcttcatgagagtaacaaaa |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23302630 |
atgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgattgtctttggaggcttcttcatgagagtaacaaaa |
23302531 |
T |
|
| Q |
101 |
gtctgg |
106 |
Q |
| |
|
|||||| |
|
|
| T |
23302530 |
gtctgg |
23302525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 23302430 - 23302344
Alignment:
| Q |
200 |
gagagacatgtatatgaactaactttcattaaccattgaaatgtagacaatgtttcatttcgaatgagcgcacaaccaaacaatatt |
286 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23302430 |
gagagagatgtatatgaacttactttcattaaccattgaaatgtagacactgtttcatttcgaatgagcgcacaaccaaacaatatt |
23302344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 16149431 - 16149535
Alignment:
| Q |
1 |
atgttttgtggacggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgattggctttggaggcttcttcatgagagtaacaaaa |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16149431 |
atgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgattgtctttggaggcttcttcatgagagtaacaaaa |
16149530 |
T |
|
| Q |
101 |
gtctg |
105 |
Q |
| |
|
||||| |
|
|
| T |
16149531 |
gtctg |
16149535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 200 - 286
Target Start/End: Original strand, 16149629 - 16149715
Alignment:
| Q |
200 |
gagagacatgtatatgaactaactttcattaaccattgaaatgtagacaatgtttcatttcgaatgagcgcacaaccaaacaatatt |
286 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16149629 |
gagagagatgtatatgaacttactttcattaaccattgaaatgtagacaccgtttcatttcgaatgagcgcacaaccaaacaatatt |
16149715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 4652038 - 4652144
Alignment:
| Q |
1 |
atgttttgtggacggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgattggc-tttggaggcttcttcatgagagtaacaaa |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4652038 |
atgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgattggcttttggaggcttcttcatgagagtaacaaa |
4652137 |
T |
|
| Q |
100 |
agtctgg |
106 |
Q |
| |
|
||||||| |
|
|
| T |
4652138 |
agtctgg |
4652144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 200 - 286
Target Start/End: Original strand, 4652238 - 4652324
Alignment:
| Q |
200 |
gagagacatgtatatgaactaactttcattaaccattgaaatgtagacaatgtttcatttcgaatgagcgcacaaccaaacaatatt |
286 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4652238 |
gagagagatgtatatgaactaactttcattaaccattgaaatgtagacaatgtttcatttcgaatgagcgcacaaccaaacaatatt |
4652324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University