View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14114_low_1 (Length: 324)
Name: NF14114_low_1
Description: NF14114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14114_low_1 |
 | |
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| [»] scaffold0368 (1 HSPs) |
| | |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 42837484 - 42837184
Alignment:
| Q |
8 |
ttattcttctaacatctcaccggaaaatcgatttctctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaact |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
42837484 |
ttattcttctcacatctcaccggaaaatcaatttctctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagt |
42837385 |
T |
|
| Q |
108 |
gtcaccggtaactcactttctcccaccgattcatgttcatattgattgtgtaaatttttctaatttcgaatttgacattagggtttgaaaatcgttgatt |
207 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42837384 |
gtcgccggtaactcactttctcccaccgattcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaaaatcgttgatt |
42837285 |
T |
|
| Q |
208 |
ttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttcnnnnnnncatcgttcgttgttgtatttcgtttctttctctgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |
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|
| T |
42837284 |
ttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttctttttttcattgttagttgttgtatttcgtttctttctctgt |
42837185 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
42837184 |
g |
42837184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 35598628 - 35598750
Alignment:
| Q |
178 |
tttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttcnnnnnnncatcg |
277 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||| | |
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|
| T |
35598628 |
tttgacaatagggtttgaaaattgttgattttgatatgtgattgtgtgaaatatagctttttcttcattgttagattagtttttgttctttttttcattg |
35598727 |
T |
|
| Q |
278 |
ttcgttgttgtatttcgtttctt |
300 |
Q |
| |
|
|| |||||||||||||||||||| |
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|
| T |
35598728 |
ttagttgttgtatttcgtttctt |
35598750 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 140 - 265
Target Start/End: Original strand, 35599177 - 35599305
Alignment:
| Q |
140 |
atgttcatattgattgtgtaaatttttctaatttcgaat--ttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaattata-actt |
236 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
35599177 |
atgttcatattgattgtgtgcattttgataattttgaatccttgacaatagggtttgaaaatcgttgattttgatatgtgattgtgtgaattatagtctt |
35599276 |
T |
|
| Q |
237 |
tttcttcattgttagaatagtttttgttc |
265 |
Q |
| |
|
||| | ||||||||| |||||||||||| |
|
|
| T |
35599277 |
tttttctattgttagattagtttttgttc |
35599305 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 13323 - 13569
Alignment:
| Q |
8 |
ttattcttctaacatctcaccggaaaatcgatttctctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaact |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
13323 |
ttattcttctcacatctcaccggaaaatcaatttctctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagt |
13422 |
T |
|
| Q |
108 |
gtcaccggtaactcactttctcccaccgattcatgttcatattgattgtgtaaatttttctaatttcgaatttgacattagggtttgaaaatcgttgatt |
207 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
13423 |
gtcgccggtaactcactttctcccaccgattcatgttcatattgattgtgtgaatttttctaatttccaatttgacattagggtttg-aaatcgttgatt |
13521 |
T |
|
| Q |
208 |
ttgatatgtgattgtgtgaattataactttttcttcattgttagaata |
255 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13522 |
ttgatatgtgattgtgtgaattatacttttttcttcattgttagaata |
13569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 7390269 - 7390428
Alignment:
| Q |
44 |
ctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaactgtcaccggtaactcactttctcccaccga------- |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
7390269 |
ctgatccacgcacatctcgccgactccgcaaatgccgccgcaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcccaccgattcatgt |
7390368 |
T |
|
| Q |
137 |
ttcatgttcatattgattgtgtaaatttttctaatttcgaatttgacattagggtttgaa |
196 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
7390369 |
ttcatgttcatattgattgtgtgaattttgctaattttgaatttgacattagggtttgaa |
7390428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 44 - 196
Target Start/End: Complemental strand, 19586843 - 19586684
Alignment:
| Q |
44 |
ctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaactgtcaccggtaactcactttctcccaccgattca--- |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19586843 |
ctgatccacgcacatctcgccgactccgcaaatgccgccgcaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcccaccgattcatgt |
19586744 |
T |
|
| Q |
141 |
----tgttcatattgattgtgtaaatttttctaatttcgaatttgacattagggtttgaa |
196 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
19586743 |
ttcatgttcatattgattgtgtgaattttgctaattttgaatttgacattagggtttgaa |
19586684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 19586544 - 19586484
Alignment:
| Q |
201 |
gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagttttt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19586544 |
gttgattttgatatgtgattgtgtgaattacaactttttcttcattgttagaatagttttt |
19586484 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 7390568 - 7390628
Alignment:
| Q |
201 |
gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagttttt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
7390568 |
gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagttttt |
7390628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 7390508 - 7390551
Alignment:
| Q |
153 |
ttgtgtaaatttttctaatttcgaatttgacattagggtttgaa |
196 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
7390508 |
ttgtgtaaattttgctaattttgaatttgacattagggtgtgaa |
7390551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 19586604 - 19586561
Alignment:
| Q |
153 |
ttgtgtaaatttttctaatttcgaatttgacattagggtttgaa |
196 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
19586604 |
ttgtgtaaattttgctaattttgaatttgacattagggtgtgaa |
19586561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 44 - 196
Target Start/End: Complemental strand, 11658697 - 11658538
Alignment:
| Q |
44 |
ctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaactgtcaccggtaactcactttctcccaccgattca--- |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
11658697 |
ctgatccacgcacatctcgccgactccgcaaatgccgccgcaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcctaccgattcatgt |
11658598 |
T |
|
| Q |
141 |
----tgttcatattgattgtgtaaatttttctaatttcgaatttgacattagggtttgaa |
196 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
11658597 |
ttcatgttcatattgattgtgtgaattttgctaattttgaatttgacattagggtttgaa |
11658538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 50234528 - 50234464
Alignment:
| Q |
201 |
gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
50234528 |
gttgattttgatatgtgattgtgtgaattacaactttttcttcattgttagaatagtttttgttc |
50234464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 11658275 - 11658215
Alignment:
| Q |
201 |
gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagttttt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
11658275 |
gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagttttt |
11658215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 11658335 - 11658292
Alignment:
| Q |
153 |
ttgtgtaaatttttctaatttcgaatttgacattagggtttgaa |
196 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
11658335 |
ttgtgtaaattttgctaattttgaatttgacattagggtgtgaa |
11658292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 11658426 - 11658383
Alignment:
| Q |
153 |
ttgtgtaaatttttctaatttcgaatttgacattagggtttgaa |
196 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
11658426 |
ttgtgtaaattttgctaattttgaatttgacattagggtgtgaa |
11658383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 50234582 - 50234545
Alignment:
| Q |
159 |
aaatttttctaatttcgaatttgacattagggtttgaa |
196 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
50234582 |
aaattttgctaatttcgaatttgacattagggtatgaa |
50234545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 51655407 - 51655566
Alignment:
| Q |
44 |
ctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaactgtcaccggtaactcactttctcccaccga------- |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51655407 |
ctgatccacgcacatctcgccgactccgcaatttccgccggaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcccaccgattcatgt |
51655506 |
T |
|
| Q |
137 |
ttcatgttcatattgattgtgtaaatttttctaatttcgaatttgacattagggtttgaa |
196 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
51655507 |
ttcatgttcatattgatagtgtgaattttgctaattttgaatttgacattagggtttgaa |
51655566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 87 - 151
Alignment:
| Q |
201 |
gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
87 |
gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagtttttgttc |
151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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