View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14114_low_3 (Length: 257)
Name: NF14114_low_3
Description: NF14114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14114_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 6405445 - 6405208
Alignment:
| Q |
19 |
atcactaaattaatattatatctcctagttccacatatatgaaaa-gggcaaacaatgacaaaagagtcttatatttaagggtaaaatgagtaattaata |
117 |
Q |
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| T |
6405445 |
atcactaagttaatattatatctcatagttccacatatatgaaaaagggcagacaatgacaaaagagtcttatatttaaaggtaaaatgagtaattaata |
6405346 |
T |
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| Q |
118 |
ttacaacaaaatttagaagtgacatccaggtcaaaattttatttttccaaatgtgtaacctcttctagaaagaagtggataaagaatcgctcgtagatta |
217 |
Q |
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| T |
6405345 |
ttacaacaaaatttagaagtgacatccagttcaaaattttatttttgcaaatgtgtaaccttttctagaaagaagtggataaagaatcgctcgtagatta |
6405246 |
T |
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| Q |
218 |
acggtnnnnnnnnttagactattactttttccaccctatg |
257 |
Q |
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| T |
6405245 |
acggt--aaaaaattagactattattttttccaccctatg |
6405208 |
T |
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