View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14114_low_6 (Length: 226)
Name: NF14114_low_6
Description: NF14114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14114_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 28428604 - 28428812
Alignment:
| Q |
1 |
atatagcatacgtgtcctttgatatgccgttttcacattctgaaagtaatttgctcgagaagattcgatccacagaattaatatagggtcaaaattacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28428604 |
atatagcatacgtgtcctttgatatgccgttttcacattctgaaagtaatttgctcgagaagattcgatccacagaattaatatagggtcaaaattacat |
28428703 |
T |
|
| Q |
101 |
tgtccttaatgg-aaaaaaatcaaannnnnnnnnnnnnnnnctatttaaacattacaaagcatatttccttaatctactataaatatcctatctgccaca |
199 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28428704 |
tgtccttaatggaaaaaaaatcaaatttttttaatttttttctatttaaacattacaaagcatatttccttaatctactataaatatcctatctgccaca |
28428803 |
T |
|
| Q |
200 |
tacaataga |
208 |
Q |
| |
|
||||||||| |
|
|
| T |
28428804 |
tacaataga |
28428812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University