View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14114_low_8 (Length: 223)
Name: NF14114_low_8
Description: NF14114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14114_low_8 |
 | |
|
| [»] scaffold0568 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 17060884 - 17060725
Alignment:
| Q |
12 |
acatctctctaaaagtttaaattaatcaaacnnnnnnnnnatttgaatctgaaaaatttattaagcaacggaagggtgcaagctgcacaataaccaaccg |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17060884 |
acatttctctaaaagtttaaattaatcaaactttttttttatttgaatctgaaaaatttattaagcaacggaagggtgcaagctgcacaataaccaaccg |
17060785 |
T |
|
| Q |
112 |
tgcaagcgaaacgaaacaaatcaacacagacaagggtgtcgtatataggcggaacacctg |
171 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17060784 |
tgcaagcgaaacgaaacaaatcaacacaaacaagggtgtcgtatataggcggaacacctg |
17060725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 2820 - 2701
Alignment:
| Q |
52 |
atttgaatctgaaaaatttattaagcaacggaagggtgcaagctgcacaataaccaaccgtgcaagcgaaacgaaacaaatcaacacagacaagggtgtc |
151 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
2820 |
atttgaatctgcaaaatttattaagcaacggaagggtgcaagctgcacaataaccaaccgcgcaagcgaaacgaaacaaatcaacacaaacaaggttgtc |
2721 |
T |
|
| Q |
152 |
gtatataggcggaacacctg |
171 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2720 |
gtatataggcggaacacctg |
2701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 9422 - 9303
Alignment:
| Q |
52 |
atttgaatctgaaaaatttattaagcaacggaagggtgcaagctgcacaataaccaaccgtgcaagcgaaacgaaacaaatcaacacagacaagggtgtc |
151 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
9422 |
atttgaatctgcaaaatttattaagcaacggaagggtgcaagctgcacaataaccaaccgcgcaagcgaaacgaaacaaatcaacacaaacaaggttgtc |
9323 |
T |
|
| Q |
152 |
gtatataggcggaacacctg |
171 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
9322 |
gtatataggcggaacacctg |
9303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 48224340 - 48224181
Alignment:
| Q |
12 |
acatctctctaaaagtttaaattaatcaaacnnnnnnnnnatttgaatctgaaaaatttattaagcaacggaagggtgcaagctgcacaataaccaaccg |
111 |
Q |
| |
|
|||| ||||||||||| | |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48224340 |
acatttctctaaaagtatgaattaatcaaactttttttttatttgaatctgcaaaatttattaagcaacggaagggtgcaagctgcacaataaccaaccg |
48224241 |
T |
|
| Q |
112 |
tgcaagcgaaacgaaacaaatcaacacagacaagggtgtcgtatataggcggaacacctg |
171 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
48224240 |
cgcaagcaaaacgaaacaaatcaacacaaacaaggatgtcgtatataggcggaacacctg |
48224181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 5357443 - 5357353
Alignment:
| Q |
79 |
acggaagggtgcaagctgcacaataaccaaccgtgcaagcgaaacgaaacaaatcaacacagacaagggtgtcgtatataggcggaacacc |
169 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||| |||||||||| |||||||| ||| ||| ||||||||| ||||||||||||||||||| |
|
|
| T |
5357443 |
acggaagggtgcaagcctcccaaaaaccaaccgcgcaagcgaaaagaaacaaaccaatacaaacaagggtgccgtatataggcggaacacc |
5357353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University