View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_high_19 (Length: 361)
Name: NF14115_high_19
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 339
Target Start/End: Complemental strand, 45392180 - 45391860
Alignment:
| Q |
20 |
atcacggtgtcaatgtttagttatagaattcactgctaatccaaatatgttctagtgttcatagaagttgatggtttgattttcatggcatagcttatgg |
119 |
Q |
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| T |
45392180 |
atcacggtgtcaatgtttagttatagaattcactgctaatccaaatatgttctagtgttcatagaagtttatgttttgattatcatggcatagcatatgg |
45392081 |
T |
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| Q |
120 |
tatgtttgatttgtaaaag-taagtgtttgattcgtgtatctgagttactcacatggtcagaactaaatatttctatgacttaaaaccttgaagagacct |
218 |
Q |
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| T |
45392080 |
tatgtttgatttgtaaaaggtaagtgtttgattcgtgtatttgagttactcacatggtcagaattaaatattgatatgacttaaaaccttgaagagacct |
45391981 |
T |
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| Q |
219 |
aacccaaatgactagtcaattaagtggtgagccttatgacttaaaaccattttgctctttcttatcttctcaatatgattcataacattgccaccattct |
318 |
Q |
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| T |
45391980 |
aacccaaatgactagtcaattaagtggtgagccttatgacttaaaatcattttgctctttcttatcttctcaatatgattcataacattgccaccattct |
45391881 |
T |
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| Q |
319 |
atcggcaatgattcaatggta |
339 |
Q |
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|||| |||||||||||||||| |
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| T |
45391880 |
atcgacaatgattcaatggta |
45391860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 45377553 - 45377348
Alignment:
| Q |
42 |
atagaattcactgctaatccaaatatgttctagtgttcatagaagttgatggtttgattttcatggcatagcttatggtatgtttgatttgtaaaag-ta |
140 |
Q |
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| T |
45377553 |
atagaattaactgctcatccaagtatgttctactatttatggaagttgatggtctgattatcacggcatagcttatggtatgtttgatttgcaaaagata |
45377454 |
T |
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| Q |
141 |
agtgtttgattcgtgtatctgagttactcacatggtcagaactaaatatttctatgacttaaaaccttgaagagacctaacccaaatgactagtcaatta |
240 |
Q |
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| T |
45377453 |
agtgtttgattcatgtatctgagtcagttactcggtcaaatctaaatattactatgactcaagaccttgaaaagacctaaaccaaatgtctagtcaatta |
45377354 |
T |
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| Q |
241 |
agtggt |
246 |
Q |
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||||| |
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| T |
45377353 |
ggtggt |
45377348 |
T |
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