View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14115_high_2 (Length: 641)

Name: NF14115_high_2
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14115_high_2
NF14115_high_2
[»] chr3 (1 HSPs)
chr3 (1-623)||(28822414-28823038)


Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Original strand, 28822414 - 28823038
Alignment:
Q  1 aaaagacaaaactacaactatttttgcaatgattaattaacgatagatatgaaacatctttcaaagaaaggttggagacttgaatccaaatgtccccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28822414 aaaagacaaaactacaactatttttgcaatgattaattaacgatagatatgaaacatctttcaaagaaaggttggagacttgaatccaaatgtccccatt 28822513  T
Q  101 catttacttatcttaaggtttaataagcagtaaagtcctggctctaaaatattccctgtctctatacttgtttttgtcaatagtttatatttaatgtctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28822514 catttacttatcttaaggtttaataagcagtaaagtcctggctctaaaatattccctgtctctatacttgtttttgtcaatagtttatatttaatgtctc 28822613  T
Q  201 tatctatannnnnnnaatgacttggactaaannnnnnnaatggaatcgcagaatataatttgatcgatatatttagaaaatctaaacgaatcattaactt 300  Q
    ||| | |        ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28822614 tatattt----ttttaatgacttggactaaattttttgaatggaatcgcagaatataatttgatcgatatatttagaaaatctaaacgaatcattaactt 28822709  T
Q  301 cnnnnnnnnnngttgcgaaatgtttaaaaatacagagacatgattaaaaatgcattagtttgatatcctaattacaaactattgacaaattcagagacct 400  Q
               |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28822710 -tttttttgttgttgcgaattgtttaaaaatacagagacatgattaaaaatgcattggtttgatatcctaattacaaactattgacaaattcagagacct 28822808  T
Q  401 aattataattatttttagtttgaatactttttaaattaaaattctgaaataatttagtgactgaaaatagttcaaactat---------ttttattattg 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||         |||||||||||    
T  28822809 aattataattatttttagtttgaatactttttaaattaaaattctcaaataatttagtgactgaaagtagttcaaactattttgtactattttattattg 28822908  T
Q  492 ttatttaaacaagtatattatgaaaataacgacgttcaaaccccattgttgtgagggtgggtatttttgcacgtcttctggaaatcatatttggaagtaa 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | || | |||||||||||||||||||||||||||||||||||||||||||||||    
T  28822909 ttatttaaacaagtatattatgaaaataacgacgttcaaacccc--ttttctaagggtgggtatttttgcacgtcttctggaaatcatatttggaagtaa 28823006  T
Q  592 acgccagttttccatggctgctaattgtgttg 623  Q
    ||||||||||||||||||||||||||||||||    
T  28823007 acgccagttttccatggctgctaattgtgttg 28823038  T

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