View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_high_26 (Length: 278)
Name: NF14115_high_26
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 6410999 - 6411264
Alignment:
| Q |
1 |
agttatttgttccttcgttgtgcattacattttctacaacctacaatcatgcattgcattagatggtgagtggtttggttttctaagattggaatatgta |
100 |
Q |
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| T |
6410999 |
agttatttgttccttcgttgtgcattacattttatacaacctacaatcatgcattgcattagatggtgagtggtttggttttctaagattggaatatgta |
6411098 |
T |
|
| Q |
101 |
tttagatgtttactaactcaatactatgtttgttagcgtatctgctacctgctgtacaaatcctgttgtggcagtagttagaacttagaactcaatcaga |
200 |
Q |
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| T |
6411099 |
tttagatgtttactaactcaatattatgtttgttagcgtatctgctacctgctgcacaaatcctgttgtggcagtggttagaacttagaactcaatcaga |
6411198 |
T |
|
| Q |
201 |
acctcgtctaagtcttgcttggtcatcacaatatatcctatctgtgataatgattccctaggctccctccctttc |
275 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
6411199 |
acctcgtctaagtcttgcttggtcatcacaatatatcatatc---------gattccctaggctccctccctttc |
6411264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 4967859 - 4967698
Alignment:
| Q |
13 |
cttcgttgtgcattacattttctacaacc---tacaatcatgcattgcattagatggtgagtggtttggttttctaagattggaatatgtatttagatgt |
109 |
Q |
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| T |
4967859 |
cttcattgtgcattacattttatacaacccataataatcatactttgcattaggtggttagtggattggttttctaagattggaataagtattcagatgt |
4967760 |
T |
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| Q |
110 |
ttactaactcaatactatgtttgttagcgtatctgctacctgctgtacaaatcctgttgtgg |
171 |
Q |
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| T |
4967759 |
atacccagtcaatagtatgtttgttagcatatctgctacctgctgcgcaaatcttgttgtgg |
4967698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 9819413 - 9819270
Alignment:
| Q |
9 |
gttccttcgttgtgcattacattttctacaacctacaatcatgcattgcattagatggtgagtggtttggttttctaagattggaatatgtatttagatg |
108 |
Q |
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||||||| ||||||||||||||||| |||| | || | |||||||||| |||||||| ||| |||||||||||| ||||||||||| |||||| |||| |
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| T |
9819413 |
gttcctttgttgtgcattacattttatacagtccacgaccatgcattgcgctagatggttagttgtttggttttctgagattggaataagtattttgatg |
9819314 |
T |
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| Q |
109 |
tttactaactcaatactatgtttgttagcgtatctgctacctgc |
152 |
Q |
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| T |
9819313 |
tatgcctagtcaatagtatgttttttagcatatctactagctgc |
9819270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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