View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_high_4 (Length: 614)
Name: NF14115_high_4
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 7 - 607
Target Start/End: Original strand, 43986781 - 43987382
Alignment:
| Q |
7 |
ataggataattgagttaggaataatggaaccatggtctttaatttcgttgaggaaaattgaaattatagtaatttgaggtatagtttctcttgcgttccg |
106 |
Q |
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| T |
43986781 |
ataggataattgagttaggaataatggaaccatggtctttaatttcgttgaggaaaattgaaattatagtaatttgacgtatagtttctcttgcgttacg |
43986880 |
T |
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| Q |
107 |
tttttgtgttgggaatatttgaggttggaaattggatatagtttgtgaaagattgattagagaagtgatgagtgttgtgggagatatgttttcgcaaggg |
206 |
Q |
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| T |
43986881 |
tttttgtgttgggaatatttgaggttggaaattggatatagtttgtgaaagattgattagagaagtgatgagtgttgtgggagatatgttttcgcaaggg |
43986980 |
T |
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| Q |
207 |
tgaaccgccgggaatgataggatacggcgatccctttgattagtaagatgagaactagtcattatttaattgaaacaaacaaattcataataatacacta |
306 |
Q |
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| T |
43986981 |
tgaaccgccgggaatgataggatacggcgatccctttgattagtaagatgagtactagtcattattgaattgaaacaaacaaattcataatataataata |
43987080 |
T |
|
| Q |
307 |
tactatagttgttttgttttgagttgagttgaatttggatagtgtaaggtaaggttatattataggaggaagagaaggacatgagcgtgtgttgttgctg |
406 |
Q |
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| T |
43987081 |
cactatagttgttttgttttgagttgagttgaacttggatagtgtaaggtaaggttatattat---aggaagagaaggacatgagcgtgtgttgttgctg |
43987177 |
T |
|
| Q |
407 |
actgtggaatatagtggacacgtgttaagatatttggttgactaggatttagaggaaatgagtaggaactggggaagattcgttatggacacgtggagga |
506 |
Q |
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| T |
43987178 |
actgtggaatatagtggacacgtgttaagatatttggttgactaggatttagaggaaatgagtaggaactggggaagattcgttatggacacgtggagga |
43987277 |
T |
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| Q |
507 |
ttacggttgctgtaactaaatttatttatctgtttttgtggatttgtaaatgtaattggg----ggaaggaaggaggagtgaggaaaagatttgaaatga |
602 |
Q |
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| T |
43987278 |
ttacggttgctgtaactaaatttatttatctgtttttgtggatttgtaaatgtaattgggggaaggaaggaaggaggagtgaggaaaagatttgaaatga |
43987377 |
T |
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| Q |
603 |
tgatg |
607 |
Q |
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| T |
43987378 |
tgatg |
43987382 |
T |
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