View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14115_high_5 (Length: 607)
Name: NF14115_high_5
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 4e-95; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 43226757 - 43226565
Alignment:
| Q |
18 |
gtttattcatgctacttgttggatgagtgaggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggtttagaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226757 |
gtttattcatgctacttgttggatgagtgaggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggtttagaag |
43226658 |
T |
|
| Q |
118 |
atgagaaatgatcgaattttcaatgagaaggtgtgtggagttgatgaaatggtggagcaagtcaaggtgattttgtggcattggagcttgagt |
210 |
Q |
| |
|
||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226657 |
atgagaattgatcgcatatttaatgagaaggtgtgtggagttgatgaaatggtggagcaagtcaaggtgattttgtggcattggagcttgagt |
43226565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 303 - 482
Target Start/End: Complemental strand, 43226374 - 43226208
Alignment:
| Q |
303 |
ttttcctctgttttgcgcagagctgttattctctcaggaaacactgttctttagaataagtattaagaaaactatgagtgccatgttcggtctttgtttt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226374 |
ttttcctctgttttgcgcagagctgttattctctcataaaacactgttctt-------------aagaaaactatgagtgccatgttcggtctttgtttt |
43226288 |
T |
|
| Q |
403 |
gaataagcggggtagcttcttctccatcaaaagaggtaattcgagagttgttatgtttttggtcaaaaccaaaggaatat |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43226287 |
gaataagcggggtagcttcttctccatcaaaagaggtaatttgagagttgttatatttttggtcaaaaccaaaggaatat |
43226208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 342 - 450
Target Start/End: Complemental strand, 43242116 - 43242008
Alignment:
| Q |
342 |
aacactgttctttagaataagtattaagaaaactatgagtgccatgttcggtctttgttttgaataagcggggtagcttcttctccatcaaaagaggtaa |
441 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| |||| || ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
43242116 |
aacattgttctttagaataagtaataagaaaattatggatgtcatgtccggtctttgttttgaataagcgggatagcttcttctgcatcaaaagaggtaa |
43242017 |
T |
|
| Q |
442 |
ttcgagagt |
450 |
Q |
| |
|
|| |||||| |
|
|
| T |
43242016 |
tttgagagt |
43242008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 481 - 540
Target Start/End: Complemental strand, 43226124 - 43226065
Alignment:
| Q |
481 |
atccttacctttaaattagtggtttcataatttgatttagatacgaaacacttgtactag |
540 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43226124 |
atccttacctttaatttagtgctttcataatttgatttagatacgaaacacttttactag |
43226065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 43226505 - 43226458
Alignment:
| Q |
198 |
ttggagcttgagtggttggtttacagttgcggcatttggtggtggtgg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43226505 |
ttggagcttgagtggttggtttacagttgcggcatttggtggtggtgg |
43226458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 15623144 - 15623223
Alignment:
| Q |
33 |
ttgttggatgagtgaggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggttt |
112 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||| || ||| | |||||||||| |
|
|
| T |
15623144 |
ttgttggacaagggaggtgtggtctaaaaagcttagacgaggggcgtggttaatttggcatgcggtcatttgggtggttt |
15623223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 15646933 - 15647012
Alignment:
| Q |
33 |
ttgttggatgagtgaggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggttt |
112 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||| || ||| | |||||||||| |
|
|
| T |
15646933 |
ttgttggacaagggaggtgtggtctaaaaagcttagacgaggggcgtggttaatttggcatgcggtcatttgggtggttt |
15647012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 16256768 - 16256842
Alignment:
| Q |
114 |
gaagatgagaaatgatcgaattttcaatgagaaggtgtgtggagttgatgaaatggtggagcaagtcaaggtgat |
188 |
Q |
| |
|
|||||||||||||||| | |||| ||| | || || ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
16256768 |
gaagatgagaaatgatagggtttttaataacaaagtttgtggggttgatgaaatggtggatcaagtcaaggtgat |
16256842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University