View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_1 (Length: 927)
Name: NF14115_low_1
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 788; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 11 - 908
Target Start/End: Original strand, 48961179 - 48962099
Alignment:
| Q |
11 |
gcatagggagaatcaaaatcacagcaatggtgaattccataggcagactcaaaatcacagcaattcttcccatcatggaaaacacattactgtgaaagga |
110 |
Q |
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| T |
48961179 |
gcatagggagaatcaaaatcacagcaatggtgaattccataggcagactcaaaatcacagcaattcttcccatcatggaaaacacattactgtgaaagga |
48961278 |
T |
|
| Q |
111 |
agagaatccagcaaggagaaaaagttttcagattctgaggactctggcatgagagtgataacaattgcaggggaaaacagaggagcctatatggaactag |
210 |
Q |
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| T |
48961279 |
agagaatccagcaaggagaaaaagttttcagattctgaggactctggcatgagagtgataacaattgcaggggaaaacagaggagcctatatggaactag |
48961378 |
T |
|
| Q |
211 |
ttcaatcccaaaagaaacaccaacccaattatcttcacaagaaggggaacacaatcaaagttgatggtggtgaatctgagagttcaagtgctgatgaagg |
310 |
Q |
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| T |
48961379 |
ttcaatcccaaaagaaacaccaacccaattatcttcacaagaaggggaacacaatcaaagttgacggtggtgaatctgagagttcaagtgctgatgaagg |
48961478 |
T |
|
| Q |
311 |
aaaaataaacaagaaagataagaataacaaaggaagaacaaaatcttcaattccaatggctgcatacatgaacagcaatgtacagtgtgtcaataactct |
410 |
Q |
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| T |
48961479 |
aaaaataaacaagaaagataagaataacaaaggaagaacaaaatcttcaattccaatggctgcatacatgaacagcaatgtacagtgtgtcaataactct |
48961578 |
T |
|
| Q |
411 |
ctactgtatcatgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagccatttggtgaaggctaccatgtgaaggaacatgttg |
510 |
Q |
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| T |
48961579 |
ctactgtatcatgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagccatttggtgaaggctaccatgtgaaggaaaatgttg |
48961678 |
T |
|
| Q |
511 |
atggtcgcaatatttgattcgaagatagtgtttgaattgattgtagttggttctttctgtttgtttctggcttataaaggtatatggggaataaaggttg |
610 |
Q |
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| T |
48961679 |
atggttgcaatatttgattcgaagatagtgtttgaattgattgtagttggttctttctgtttgtttctggcttataaaggtatatggggaataaaggttg |
48961778 |
T |
|
| Q |
611 |
aagattctctccacttcatcattagtggaaaataaat--------gcatgcat--atggatgcat--------------gactttaactccaaccagatg |
686 |
Q |
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| T |
48961779 |
aagattctctccact---tcattagtggaaaataaatgtatggacgcatgcatgcatgcatgcatgcatatggatgcatgactttaactccaaccaggtg |
48961875 |
T |
|
| Q |
687 |
ctacctta--gttttctatgaaagatagatagagatcatgaatcttgtgtctattaagaatgggatgatggtttgtgatatatggttcatactccttatt |
784 |
Q |
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| T |
48961876 |
ctaccttagtgttttctatgaaagatagatagagatcatgaatcttgtgtctattaagaatgggatgatggtttgtgatatatggttcatactccttatt |
48961975 |
T |
|
| Q |
785 |
tgtttattgaaatagcgatgttttgaaataaatttgtaactctgataatgttgtttatgtttgttctgattgaaaattgtgttttgttcaagttgatgta |
884 |
Q |
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| T |
48961976 |
tgtttattgaaatagcgatgttttgaaataaatttgtaactccgataatgttgtttatgtttgttctgattgaaaattgtgttttgttcaagttgatgta |
48962075 |
T |
|
| Q |
885 |
attattcaaatactatgagactaa |
908 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
48962076 |
attattcaaatactatgagactaa |
48962099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 490
Target Start/End: Original strand, 9485931 - 9486046
Alignment:
| Q |
375 |
tacatgaacagcaatgtacagtgtgtcaataactctctactgtatcatgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagc |
474 |
Q |
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|||||||| |||||||| |||||||| ||||| || | | | ||||||||||| |||| ||||||||||| |||| ||| | || |||||||||| |
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| T |
9485931 |
tacatgaatagcaatgtgcagtgtgtgaataattcattgttattacatgcttcttgtacccaccatgatccaggggtgcaacttacactttcaaagaagc |
9486030 |
T |
|
| Q |
475 |
catttggtgaaggcta |
490 |
Q |
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| T |
9486031 |
catttggtaaaggcta |
9486046 |
T |
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