View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_10 (Length: 447)
Name: NF14115_low_10
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 20 - 437
Target Start/End: Original strand, 1946468 - 1946885
Alignment:
| Q |
20 |
agttcttccgcactagaaaaaatatctggtggtggtggagcaccgccactcatcactaccaccttcccagaaagcagcttcctaattggtgaatttatta |
119 |
Q |
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| T |
1946468 |
agttcttccgcactagaaaaaatatctggtggtggtggagcaccgccactcatcactaccaccttcccagaaagcggcttcctaattggtgaatttatta |
1946567 |
T |
|
| Q |
120 |
acatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatt |
219 |
Q |
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| T |
1946568 |
acatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatt |
1946667 |
T |
|
| Q |
220 |
tgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttgatttcatttcatta |
319 |
Q |
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| T |
1946668 |
tgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttgatttcatttcatta |
1946767 |
T |
|
| Q |
320 |
ataataattgtagccaaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattg |
419 |
Q |
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| T |
1946768 |
ataataattgtagccaaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattg |
1946867 |
T |
|
| Q |
420 |
tatcacattcatcctttg |
437 |
Q |
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| T |
1946868 |
tatcacattcatcctttg |
1946885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 106 - 437
Target Start/End: Original strand, 1928442 - 1928773
Alignment:
| Q |
106 |
tggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacattt |
205 |
Q |
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||||| ||||||||| |||||||| || |||||| || ||| |||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||| |
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| T |
1928442 |
tggtgcatttattaatgagttcagaactgttggtgcaccccccgtgtgtgttactttgtgcttaaaaatattgtcaaatatccctttagcagttacattt |
1928541 |
T |
|
| Q |
206 |
cttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttg |
305 |
Q |
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||| |||||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||| |||| |||||||||||||||||||| | | | |
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| T |
1928542 |
ctttggcaaacatttgcgccaccttgagcagcaataccccaaggaagacaccatccattgcaatgaaacatgggaacacaccataaatacaccggcatag |
1928641 |
T |
|
| Q |
306 |
atttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgta |
405 |
Q |
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| ||||| ||||| | || ||||||||||||||||||||||||||||||||| |||||| | | |||||| |||||| ||||||| |||||||||||||| |
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| T |
1928642 |
acttcatctcattgagaagaattgtagccaaagaattaagataagcacctctgtggctatatactacacctttaggacttgatgttgttccagaagtgta |
1928741 |
T |
|
| Q |
406 |
acttattgaaattgtatcacattcatcctttg |
437 |
Q |
| |
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| | | ||||||| ||| |||||||| |||| |
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|
| T |
1928742 |
attcaaagaaattggatcccattcatcttttg |
1928773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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