View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_12 (Length: 436)
Name: NF14115_low_12
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 39863024 - 39863264
Alignment:
| Q |
16 |
acaccatactctcatatgtagcatagtcaagctcccacataccaactttttcttagttgatctattaattaataattatagcttttcaccgatggaaatt |
115 |
Q |
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| T |
39863024 |
acaccatactctcatatgtagcatagtcaagctcccacataccaactttttcttagttcatctattaattt-------tagcttttcaccgatggaaatt |
39863116 |
T |
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| Q |
116 |
tcaaaacaaactctaacaaaatgattattcgnnnnnnnaattatcgtttcaatgtggcgtcgtcaccgtcatcgttgtcgttgctagagatggtcataga |
215 |
Q |
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| T |
39863117 |
tcaaaacaaactctaataaaatgattattcgtttttttaattatcgtttcaatgtggcgtcgtcaccgtcatcgttgttgttgctagagatggtcataga |
39863216 |
T |
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| Q |
216 |
gaaagagtggctgaacagagggagagggttccattatgattctcttca |
263 |
Q |
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| T |
39863217 |
gtaagagtggctgaacagagggagagggtttcattatgattctcttca |
39863264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 306 - 426
Target Start/End: Original strand, 39864309 - 39864442
Alignment:
| Q |
306 |
taatctcattcgataataaaaatgttaaattaaattgtgggtc-------------aagataatgaatctgctaagggtttccaaattctcgacaagaaa |
392 |
Q |
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| T |
39864309 |
taatctcattcgataataaaaatgttaaattaaattgtgggtttccaattgtcttgaagaaaatgaatctgctaagggtttccaaattctcgacaagaaa |
39864408 |
T |
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| Q |
393 |
taaaaactgggtttacatagatcatatatgatga |
426 |
Q |
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| T |
39864409 |
taaaaaccgggtttacatagatcatatatgatga |
39864442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 39863277 - 39863331
Alignment:
| Q |
254 |
attctcttcattgctcaacattgggatgaaatttggggcttgggcatttgactaa |
308 |
Q |
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| T |
39863277 |
attctcttcattgctcaacattgggatgaaatttggggcttgggcatttgactaa |
39863331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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