View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_13 (Length: 433)
Name: NF14115_low_13
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Original strand, 20401150 - 20401563
Alignment:
| Q |
14 |
gaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtatcaattttaaatttaccttgaaatgcatcaatattatcaccaatacct |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20401150 |
gaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtctcaattttaaatttaccttgaaatgcatcaatattatcaccaatacct |
20401249 |
T |
|
| Q |
114 |
acccaagatgtagggaaatcatcatgagctagaacccattttgcagattcagcaaactttggtttcttaacaaaatcaatatctacttcgtcagttgtaa |
213 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
20401250 |
acccaagatgtagggaagtcatcatgagctagaacccattttgcagattcagcacactttggtttcttaacaaactcaatatctagttcgtcagttgtaa |
20401349 |
T |
|
| Q |
214 |
agatgacaccacgtcttactcgaatgataaatctaactggaaagcctctaacaacctcagaaaaatcttgtaggacagtaactggacattctgagtctcc |
313 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20401350 |
agatgacaccacgtcttactcgaatgataaacctaactggaaagcctctaacaacctcagaaaaatcttgtatgacagtaactggacattctgagtctcc |
20401449 |
T |
|
| Q |
314 |
tgtcttaccaagcttcaatccaccacctcctcctttagatataagtggtaaaatatagtatttgctaccaggaaatacggggtttccatttatgtcttca |
413 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20401450 |
tgttttaccaagcttcaatccaccacctcctcctttagatataagtggtgcaatatagtatttgccaccaggaaatacggggtttccatttatgtcttca |
20401549 |
T |
|
| Q |
414 |
attgtttcagtaaa |
427 |
Q |
| |
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| |||||||||||| |
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| T |
20401550 |
actgtttcagtaaa |
20401563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Original strand, 20433377 - 20433790
Alignment:
| Q |
14 |
gaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtatcaattttaaatttaccttgaaatgcatcaatattatcaccaatacct |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20433377 |
gaacaatggacaatacacaagcttgtatgctcctgatcctgaaccaagtgtctcaattttaaatttaccttgaaaagcatcaatattatcaccaatacct |
20433476 |
T |
|
| Q |
114 |
acccaagatgtagggaaatcatcatgagctagaacccattttgcagattcagcaaactttggtttcttaacaaaatcaatatctacttcgtcagttgtaa |
213 |
Q |
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||||||||||||||||||||||||||||| || |||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
20433477 |
acccaagatgtagggaaatcatcatgagcaagcacccatttggcagattcagcacactttggtttcttaacaaactcaatatctacttcatcagttgtaa |
20433576 |
T |
|
| Q |
214 |
agatgacaccacgtcttactcgaatgataaatctaactggaaagcctctaacaacctcagaaaaatcttgtaggacagtaactggacattctgagtctcc |
313 |
Q |
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|||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20433577 |
agatgacaccacgttttactattatggtaaatctaactggtaagcctctaacaacctcagaaaaatcttgtaggacagtaactggacattctgagtctcc |
20433676 |
T |
|
| Q |
314 |
tgtcttaccaagcttcaatccaccacctcctcctttagatataagtggtaaaatatagtatttgctaccaggaaatacggggtttccatttatgtcttca |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20433677 |
tgtcttaccaagcttcaatccaccacctcctcctttagatataagtggtgcaatatagtatttgccaccaggaaatacggggtttccatttatgtcttca |
20433776 |
T |
|
| Q |
414 |
attgtttcagtaaa |
427 |
Q |
| |
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| ||||||||||| |
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|
| T |
20433777 |
acagtttcagtaaa |
20433790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 24222264 - 24222340
Alignment:
| Q |
264 |
acaacctcagaaaaatcttgtaggacagtaactggacattctgagtctcctgtcttaccaagcttcaatccaccacc |
340 |
Q |
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|||||||||||| ||||||| || ||||||| |||||||| ||||| | ||||||||||||| ||||||||||||| |
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| T |
24222264 |
acaacctcagaataatcttgaagtacagtaagtggacattttgagttttttgtcttaccaagcctcaatccaccacc |
24222340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 24275214 - 24275278
Alignment:
| Q |
277 |
aatcttgtaggacagtaactggacattctgagtctcctgtcttaccaagcttcaatccaccacct |
341 |
Q |
| |
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||||||| || ||||||| |||||||| ||||| ||| |||||| ||||| |||||||||||||| |
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| T |
24275214 |
aatcttgaagtacagtaaatggacattttgagtttccagtcttagcaagcctcaatccaccacct |
24275278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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