View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14115_low_14 (Length: 430)

Name: NF14115_low_14
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14115_low_14
NF14115_low_14
[»] chr3 (13 HSPs)
chr3 (24-292)||(23459039-23459304)
chr3 (293-399)||(23389205-23389314)
chr3 (153-286)||(23367815-23367952)
chr3 (33-111)||(23501789-23501868)
chr3 (246-292)||(23407236-23407282)
chr3 (246-292)||(23465892-23465938)
chr3 (33-116)||(23369371-23369455)
chr3 (246-292)||(23389499-23389545)
chr3 (253-292)||(23481887-23481926)
chr3 (152-198)||(23407306-23407352)
chr3 (249-286)||(23360975-23361012)
chr3 (67-116)||(23368016-23368065)
chr3 (152-201)||(23501671-23501720)
[»] scaffold0201 (2 HSPs)
scaffold0201 (41-142)||(17433-17534)
scaffold0201 (226-288)||(16237-16295)
[»] scaffold0570 (2 HSPs)
scaffold0570 (33-111)||(859-936)
scaffold0570 (253-292)||(8643-8682)
[»] scaffold0022 (1 HSPs)
scaffold0022 (159-286)||(166955-167086)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 24 - 292
Target Start/End: Complemental strand, 23459304 - 23459039
Alignment:
Q  24 tgaacaggtataatctgaaaaatgattcaaaattgaaggacgccaagcttaattttgcatatattttaatctgaaatccaattccatagtttatctagta 123  Q
    |||| |||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23459304 tgaataggtataatctgaaaaatgactcaaaattgaaggacaacaagcttaattttgcatatattttaatctgaaatccaattccatagtttatctagta 23459205  T
Q  124 gtctccgtcaaaaagcaagcaagcgaagccacacctgttattttatattttaaatttgacacattacatgtatatacatcaggaccaaagcattagaaag 223  Q
    |||||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||  |||    
T  23459204 gtctccatcaaaaaggaagcaagctaagccacacttgttattttatattttaaatttgacccattacatgtatatacatcaggaccaaggcattatgaag 23459105  T
Q  224 tg-ttgtgtgtgctcatccttagttaattaattttcatcgaaaattgattccagcagaagctaagccata 292  Q
    || ||||||||| | ||||    |||||||||||||||| ||| ||||||||| ||||||||||||||||    
T  23459104 tgtttgtgtgtgtttatcc----ttaattaattttcatccaaatttgattccaccagaagctaagccata 23459039  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 399
Target Start/End: Complemental strand, 23389314 - 23389205
Alignment:
Q  293 atatttgttaattaaaactcaacatgttttccaggaattaaagtttgactaaattgaccgacagtttataatatccaaatgaaatatgaatat----cac 388  Q
    |||||||||||||||||||||| |||||| |||| |||| ||||||||| ||||||| |||||||||| |||||||||||| |||||||||||    |||    
T  23389314 atatttgttaattaaaactcaaaatgtttcccagaaattgaagtttgacaaaattgatcgacagtttacaatatccaaatg-aatatgaatatataccac 23389216  T
Q  389 ttttaattcaa 399  Q
    |||||||||||    
T  23389215 ttttaattcaa 23389205  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 153 - 286
Target Start/End: Complemental strand, 23367952 - 23367815
Alignment:
Q  153 cacacctgttattttatattttaaatttgacacattacatgtat---atacatcaggacc----aaagcattagaaagtg-ttgtgtgtgctcatcctta 244  Q
    ||||| |||||||||||||||||| |||||| ||||||||||||   ||||| || ||||    |||||||||  ||||| ||||||||| ||||||       
T  23367952 cacacttgttattttatattttaattttgacccattacatgtatataatacaccacgaccaacgaaagcattatgaagtgtttgtgtgtgttcatcc--- 23367856  T
Q  245 gttaattaattttcatcgaaaattgattccagcagaagctaa 286  Q
     |||||||||||||||  ||||||||||||||||||||||||    
T  23367855 -ttaattaattttcattcaaaattgattccagcagaagctaa 23367815  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 23501868 - 23501789
Alignment:
Q  33 ataatctgaaaaa-tgattcaaaattgaaggacgccaagcttaattttgcatatattttaatctgaaatccaattccata 111  Q
    ||||||||||||| ||  ||||||||||| |||  ||||| ||||||||||||||||||||||||||||||| |||||||    
T  23501868 ataatctgaaaaaatgtgtcaaaattgaacgacaacaagcataattttgcatatattttaatctgaaatccatttccata 23501789  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 23407282 - 23407236
Alignment:
Q  246 ttaattaattttcatcgaaaattgattccagcagaagctaagccata 292  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  23407282 ttaattaattttcatccaaaattgattccagcagaagctaagccata 23407236  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 23465938 - 23465892
Alignment:
Q  246 ttaattaattttcatcgaaaattgattccagcagaagctaagccata 292  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  23465938 ttaattaattttcatctaaaattgattccagcagaagctaagccata 23465892  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 23369455 - 23369371
Alignment:
Q  33 ataatctgaaaaatgattcaaaattgaaggacgccaagctta-attttgcatatattttaatctgaaatccaattccatagttta 116  Q
    |||||||||||||||||||||||||||| |||  ||||| ||  |||||||||||||||||||| |||| || ||||||| ||||    
T  23369455 ataatctgaaaaatgattcaaaattgaacgacaacaagcatattttttgcatatattttaatctaaaatgcatttccatatttta 23369371  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 23389545 - 23389499
Alignment:
Q  246 ttaattaattttcatcgaaaattgattccagcagaagctaagccata 292  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||    
T  23389545 ttaattaattttcatccaaaattgattccaggaaaagctaagccata 23389499  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 23481926 - 23481887
Alignment:
Q  253 attttcatcgaaaattgattccagcagaagctaagccata 292  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  23481926 attttgatccaaaattgattccagcagaagctaagccata 23481887  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 23407352 - 23407306
Alignment:
Q  152 ccacacctgttattttatattttaaatttgacacattacatgtatat 198  Q
    |||||| |||||||||||||||||| |||||| |||||||| |||||    
T  23407352 ccacacttgttattttatattttaattttgacccattacatctatat 23407306  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 23361012 - 23360975
Alignment:
Q  249 attaattttcatcgaaaattgattccagcagaagctaa 286  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  23361012 attaattttcattcaaaattgattccagcagaagctaa 23360975  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 23368065 - 23368016
Alignment:
Q  67 caagcttaattttgcatatattttaatctgaaatccaattccatagttta 116  Q
    ||||| || ||||||||||||||||||||||||| || ||||||| ||||    
T  23368065 caagcatatttttgcatatattttaatctgaaattcatttccatatttta 23368016  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 23501720 - 23501671
Alignment:
Q  152 ccacacctgttattttatattttaaatttgacacattacatgtatataca 201  Q
    |||||| | |||||||||||||||| |||||| |||||||| ||||||||    
T  23501720 ccacacttattattttatattttaattttgacccattacatctatataca 23501671  T

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Target: scaffold0201 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 17534 - 17433
Alignment:
Q  41 aaaaatgattcaaaattgaaggacgccaagcttaattttgcatatattttaatctgaaatccaattccatagtttatctagtagtctccgtcaaaaagca 140  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||  | ||||||| ||||| ||||||||||| ||||||||||    
T  17534 aaaaatgattcaaaattgaaggataacaagcttaattttgcatatattttaatctgaaatgtatttccatattttatgtagtagtctccatcaaaaagca 17435  T
Q  141 ag 142  Q
    ||    
T  17434 ag 17433  T

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Target: scaffold0201; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 16295 - 16237
Alignment:
Q  226 ttgtgtgtgctcatccttagttaattaattttcatcgaaaattgattccagcagaagctaagc 288  Q
    ||||||||||||||||     ||||||||||||||| ||||||||||||| ||||||||||||    
T  16295 ttgtgtgtgctcatcc----gtaattaattttcatccaaaattgattccaacagaagctaagc 16237  T

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Target: scaffold0570 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 859 - 936
Alignment:
Q  33 ataatctgaaaaatgattcaaaattgaaggacgccaagcttaattttgcatatattttaatctgaaatccaattccata 111  Q
    ||||||||||||||||||||||||| || |||  ||| ||  |||||||||||||||||||||||||| || |||||||    
T  859 ataatctgaaaaatgattcaaaattcaacgacaacaa-ctccattttgcatatattttaatctgaaattcatttccata 936  T

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Target: scaffold0570; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 8643 - 8682
Alignment:
Q  253 attttcatcgaaaattgattccagcagaagctaagccata 292  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  8643 attttgatccaaaattgattccagcagaagctaagccata 8682  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 166955 - 167086
Alignment:
Q  159 tgttattttatattttaaatttgacacattacatgtatatacatca-------ggaccaaagcattagaaagt-gttgtgtgtgctcatccttagttaat 250  Q
    |||||||||||||||||| |||||  ||||||||||| ||||||||         |||||||||||  |||||  ||||||||||||||||    |||||    
T  166955 tgttattttatattttaattttgatccattacatgtaaatacatcatcacgaccaaccaaagcattctaaagtatttgtgtgtgctcatcc----ttaat 167050  T
Q  251 taattttcatcgaaaattgattccagcagaagctaa 286  Q
    ||||||||||| ||||||||||| || | |||||||    
T  167051 taattttcatccaaaattgattctagtataagctaa 167086  T

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