View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_15 (Length: 419)
Name: NF14115_low_15
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 2615956 - 2615568
Alignment:
| Q |
18 |
atttcaaatatcatcaagcatgtttcccctttagttgaatatattgtggacctctcttgtcacctctcttatttttccatcattttaattgttcattgaa |
117 |
Q |
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| T |
2615956 |
atttcaaatatcatcaagcatatttcccctttagttgaatatattgtggacctctcttgtcacctctcttatttttccatcattttaattgttcattgaa |
2615857 |
T |
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| Q |
118 |
acccgttattgttctcaaggggtatgagagccctgatttggcttgttgggtaagagggaatgaatcctgtgttgaaacatcttataggagatagactcac |
217 |
Q |
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| T |
2615856 |
ccccgttattgttctcaaggggtatgagagccctgatttggcttgttgggtaagagggaatgaatcctgtgttgaaacatgttataggagatagactcac |
2615757 |
T |
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| Q |
218 |
acttatgggagagattgttgggttttaagtccgagtgtggttaagtctcaaatcgcttatgaatgagtaaaatataaaatttataagagatgtgtctcat |
317 |
Q |
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||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2615756 |
acttatgggagagattgttaggtttcaagttcgagtgtggttaagtctcaaatcgcctatgaatgagtaaaatataagatttataagagatgtgtctcat |
2615657 |
T |
|
| Q |
318 |
attcctaataccttaaggttttggatggagatagtgtcttactctcttgtggtaccagagcatttgactcgtacttgttctcatcgcct |
406 |
Q |
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| T |
2615656 |
attcctaataccttaaggttttgtatggagatagtgtcttactctcttgtggtactagagcatttgactcgtagttgttctcgtcgcct |
2615568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 349
Target Start/End: Original strand, 11199913 - 11200028
Alignment:
| Q |
232 |
ttgttgggttttaagtccgagtgtggttaagtctcaaatcgcttatgaatgagtaaaatataaaatttataagagatgtgtctcatattcctaatacctt |
331 |
Q |
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| T |
11199913 |
ttgttgggttttaagtgtgagtg--gttaagtctcacattgcctatgaataggtaaaatgttggatatataagagaggtgactcatatgcctaatgcctt |
11200010 |
T |
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| Q |
332 |
aaggttttggatggagat |
349 |
Q |
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|||||||||| ||||||| |
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| T |
11200011 |
aaggttttgggtggagat |
11200028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 50391994 - 50391944
Alignment:
| Q |
299 |
tataagagatgtgtctcatattcctaataccttaaggttttggatggagat |
349 |
Q |
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| T |
50391994 |
tataagatatgtgactcatatacctaatgtcttaaggttttggatggagat |
50391944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 349
Target Start/End: Complemental strand, 28296154 - 28296080
Alignment:
| Q |
275 |
tatgaatgagtaaaatataaaatttataagagatgtgtctcatattcctaataccttaaggttttggatggagat |
349 |
Q |
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|||||||||||||||||| ||| ||||||||| ||| | ||||| |||||| ||||||||||||| ||||||| |
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| T |
28296154 |
tatgaatgagtaaaatattgaatgtataagagaggtgacccatatacctaatctcttaaggttttgggtggagat |
28296080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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