View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14115_low_16 (Length: 410)

Name: NF14115_low_16
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14115_low_16
NF14115_low_16
[»] chr1 (1 HSPs)
chr1 (3-410)||(45706512-45706940)


Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 3 - 410
Target Start/End: Original strand, 45706512 - 45706940
Alignment:
Q  3 ttctcttccttttaatgatgaatcttaaatgatattttcctttttaccaaaacaatggctatcatcagtggatattttaccattcttgaggctggtagtg 102  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45706512 ttctcttccttttaatgttgaatcttaaatgatattttcctttttactaaaacaatggctatcatcagtggatattttaccattcttgaggctggtagtg 45706611  T
Q  103 tacccaagaaactcgatccatccaccaacacatcattttgtctttggttattcatgacttaagtaagactcttattttctttttatggatttcgatttcc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45706612 tacccaagaaactcgatccatccaccaacacatcattttgtctttggttattcatgacttaagtaagactcttattttctttttatggatttcgatttcc 45706711  T
Q  203 ttttcaactagtgttcccaacttcgttgactagatacttgtttgaaagttctgttttctatgttgtcaaaat--------gaggcttaatccttgccaa- 293  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||||     
T  45706712 ttttcaactagtgttcctaacttcgttgactagatacttgtttgaaagttctgttttctatgttgtcaaaatataactaggaggctcaatccttgccaaa 45706811  T
Q  294 ------------tcattgatctacctttctcaggtaaaaatcaaatgtattgttctagcatataattataaattatgtttaagacttaaagtgacaattg 381  Q
                |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  45706812 agccatcttgtgtcattgatctacctttcttaggtaaaaatcaaatgtattgttctagcatataattataaattatgttttagacttaaagtgacaaatg 45706911  T
Q  382 tttatgatttatagacatgttagtagtta 410  Q
    |||||||||||||||||||||||||||||    
T  45706912 tttatgatttatagacatgttagtagtta 45706940  T

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