View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_17 (Length: 402)
Name: NF14115_low_17
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 4 - 384
Target Start/End: Complemental strand, 4530544 - 4530160
Alignment:
| Q |
4 |
atgtcgaagaatattaatcgatttaagagagtatat--tcaaaaccacatccatgattgaggaaagatttt-gacacaagtaaaatacttgaataatgat |
100 |
Q |
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|||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| |
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| T |
4530544 |
atgtcgtaaaatattaatcgatttaagagagtatatattcaaaaacacatccatgattgaggaaagatttttgactcaagtaaaatacttgagtaatgat |
4530445 |
T |
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| Q |
101 |
ggtctcataggaaggatctcaacttttcggatgcaagagactttacgccagttttttccatatggttttgcatatctttcctctaataatgagcagttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4530444 |
ggtctcataggaaggatctcaacttttcggatgcgagagattttacgccagtcttgaccatatggttttgcatatctttcctctaataatgagcagttat |
4530345 |
T |
|
| Q |
201 |
aaatgcaaagtttctgcaaagatacaaggttatgtattgcttcgggcagtgatgt-aaaccattgcaattgtggaactcaagggtcaagagcgatgagag |
299 |
Q |
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| T |
4530344 |
acatgcaaagtttctgcaaagatacaaggttacgcatcgcttcgggcagtgatgtcaaaccattgcaattgtggaactcaagagtcaagagcgatgagag |
4530245 |
T |
|
| Q |
300 |
attccctatccagtctggcaatcttttgccgcaaaatctgtttataactagtttttgaagcgagtggtgtggctgcaggccttct |
384 |
Q |
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| T |
4530244 |
attccctatccagtctggtaactttttgccgcaaaacccatctataactagtttttgaagcgaatggtgtggctgcagaccttct |
4530160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 192 - 381
Target Start/End: Complemental strand, 4499084 - 4498891
Alignment:
| Q |
192 |
agcagttataaatgcaaagtttctgcaaagatacaaggttatgtattgcttcgggcagtgatgt-aaaccattgcaattgtggaactcaagggtcaagag |
290 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||| |
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| T |
4499084 |
agcagttagaaatgcaaagtttctgcaaagatacaaggttactcatttcttcgggcagtgatgtcaaactattgcaattgtggaactcaagagtcaagag |
4498985 |
T |
|
| Q |
291 |
cgatgagagattccctatccagtctggcaatcttttgccgcaaaatctgtttataactagtttttgaagcga---gtggtgtggctgcaggcct |
381 |
Q |
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| T |
4498984 |
cgatgagagattccacatccagtctggtaacctgctgccacaaaacccatctataactagttttcgaagtgagtggtggtgtggctgcaggcct |
4498891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 192 - 382
Target Start/End: Original strand, 4397592 - 4397782
Alignment:
| Q |
192 |
agcagttataaatgcaaagtttctgcaaagatacaaggttatgtattgcttcgggcagtgatgt-aaaccattgcaattgtggaactcaagggtcaagag |
290 |
Q |
| |
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| T |
4397592 |
agcagttagaaatgcaaaggt-cttcaaagatacaaggttacaca---cttccggcagtaatgtcaaactattgcaattgtggatctcaagagtcaagag |
4397687 |
T |
|
| Q |
291 |
cgatgagagattccctatccagtctggcaatcttttgccgcaaaatctgtttataactagtttttgaagcga---gtggtgtggctgcaggcctt |
382 |
Q |
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| T |
4397688 |
cgatgagagattccatatccagtctggtaacctgctgccgcaaaacccatctataactagttttcgaagtgagtggtggtgtggctgcaggcctt |
4397782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 263 - 382
Target Start/End: Complemental strand, 4520099 - 4519977
Alignment:
| Q |
263 |
tgcaattgtggaactcaagggtcaagagcgatgagagattccctatccagtctggcaatcttttgccgcaaaatctgtttataactagtttttgaagcga |
362 |
Q |
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||||||||||||||||||| |||||||||||||||||||| | |||||||||||| || ||||||||||||| | | ||||||||||||| |||| || |
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| T |
4520099 |
tgcaattgtggaactcaagagtcaagagcgatgagagattacatatccagtctggtaactttttgccgcaaaacccatctataactagttttcgaagtga |
4520000 |
T |
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| Q |
363 |
---gtggtgtggctgcaggcctt |
382 |
Q |
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|||||||||||||||||||| |
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| T |
4519999 |
atggtggtgtggctgcaggcctt |
4519977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 4499488 - 4499433
Alignment:
| Q |
51 |
tccatgattgaggaaagattttgacacaagtaaaatacttgaataatgatggtctc |
106 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
4499488 |
tccatgattgaggaaagattttgactcaagtaaaatacttgagtaatgatggtctc |
4499433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 4520929 - 4520878
Alignment:
| Q |
51 |
tccatgattgaggaaagattttgacacaagtaaaatacttgaataatgatgg |
102 |
Q |
| |
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||||||||||| ||||||||||||| |||| ||||||||||| ||||||||| |
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| T |
4520929 |
tccatgattgatgaaagattttgactcaagaaaaatacttgagtaatgatgg |
4520878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 201 - 381
Target Start/End: Original strand, 18033394 - 18033578
Alignment:
| Q |
201 |
aaatgcaaagtttctgcaaagatacaaggttatgtattgcttcgggcagtgatgt-aaaccattgcaattgtggaactcaagggtcaagagcgatgagag |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
18033394 |
aaatgcaaagtttctgcaaagatacaaggttactcatttcttcgggcagtgatgtcaaactattgcaattgtggaactcaagagtcaagagcgatgagag |
18033493 |
T |
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| Q |
300 |
attccctatccagtctggcaatcttttgccgcaaaatctgtttataactagtttttgaagcga---gtggtgtggctgcaggcct |
381 |
Q |
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||||| ||||||||||| || || |||| ||||| | | ||||||||||||| |||| || ||||||||||||||||||| |
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| T |
18033494 |
attccacatccagtctggtaacctgctgccacaaaacccatctataactagttttcgaagtgagtggtggtgtggctgcaggcct |
18033578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 192 - 382
Target Start/End: Complemental strand, 18047734 - 18047544
Alignment:
| Q |
192 |
agcagttataaatgcaaagtttctgcaaagatacaaggttatgtattgcttcgggcagtgatgt-aaaccattgcaattgtggaactcaagggtcaagag |
290 |
Q |
| |
|
|||||||| |||||||||| | || |||||||||||||||| | |||| |||||| |||| |||| |||||||||||||| |||||| |||||||| |
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| T |
18047734 |
agcagttagaaatgcaaaggt-cttcaaagatacaaggttacaca---cttccggcagtaatgtcaaactattgcaattgtggatctcaagagtcaagag |
18047639 |
T |
|
| Q |
291 |
cgatgagagattccctatccagtctggcaatcttttgccgcaaaatctgtttataactagtttttgaagcga---gtggtgtggctgcaggcctt |
382 |
Q |
| |
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|||||||||||||| |||||||||||| || || |||||||||| | | ||||||||||||| |||| || |||||||||||||||||||| |
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| T |
18047638 |
cgatgagagattccatatccagtctggtaacctgctgccgcaaaacccatctataactagttttcgaagtgagtggtggtgtggctgcaggcctt |
18047544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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