View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_18 (Length: 401)
Name: NF14115_low_18
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 381
Target Start/End: Original strand, 30350550 - 30350919
Alignment:
| Q |
11 |
ttattctctatgcttttgatggtgcgtaagaatatttgctttttgtatgagatatggtgatcacatattcatatacatcaactccactttagttattttt |
110 |
Q |
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| T |
30350550 |
ttattctctatgcttttgatggtgcgtaagaatatttgctttttgtatgagatatggtgatcacatattcatatacatcaactccactttagttattttt |
30350649 |
T |
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| Q |
111 |
ccctacatcatgctgtttaattttgttatttcatgaggcataagatcatcaaacatataagccttattattgtcatttgtcaaaagccttattatgtcat |
210 |
Q |
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| T |
30350650 |
ccctacatcatgctgtttaattttgttatttcatgaggcataagatcatcaaacatataagccttatta-tgtcatttgtcaaaagccttattatgtcat |
30350748 |
T |
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| Q |
211 |
ttgtcaattatgtaaaagattaatatactatgtcgtggagacatttgatgcgtcgggacgcggtaggaatccgtaatatctctcttctttgtatatattg |
310 |
Q |
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| T |
30350749 |
ttgtcaattatgtacaagattaatatactatgtcgtggagacatttgaagcgttgggacgcggtaggaatccgcaatatctctcttctttgtatatactg |
30350848 |
T |
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| Q |
311 |
tggaagaatcaaacctgagatcttgatgatgaactcactcccagatcctaagtcaatatcattaggttaac |
381 |
Q |
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| T |
30350849 |
tggaagaatcaaacatgagatcttgatgatgaactcactctcaaatcttaagtcaatatcattaggttaac |
30350919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 27223129 - 27223182
Alignment:
| Q |
315 |
agaatcaaacctgagatcttgatgatgaactcactcccagatcctaagtcaata |
368 |
Q |
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| T |
27223129 |
agaatcgaacctgagaccttgaagaagagcacactcccagatcctaagtcaata |
27223182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 34041588 - 34041640
Alignment:
| Q |
316 |
gaatcaaacctgagatcttgatgatgaactcactcccagatcctaagtcaata |
368 |
Q |
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| T |
34041588 |
gaatcaaacctgagaccttgaggaggagcacactctcagatcctaagtcaata |
34041640 |
T |
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