View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_22 (Length: 362)
Name: NF14115_low_22
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 49637768 - 49637430
Alignment:
| Q |
8 |
tcttttttatttaactaacacccacttcactttcaatttctctctttccaattcaattctagtaaccctaaacccccaattttcacaaaccctaaaatct |
107 |
Q |
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| T |
49637768 |
tcttttttatttaactaacacccacttcactttcaatttctctctttccaattcaattctagtaaccctaaacccccaattttcacaaaccctaaaatct |
49637669 |
T |
|
| Q |
108 |
ccaattctccatagatcctcttctttcccatcgaattttccaatattttcaacaccgttgaccacactcgaggtttatccaaatacccatttcataaagt |
207 |
Q |
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| T |
49637668 |
ccaattctccatagatcctcttctttcccatcgaattttccaatattttcaacaccgttgaccacactcgaggtttatccaaatacccatttcataaagt |
49637569 |
T |
|
| Q |
208 |
tccgnnnnnnnnnncttcatctgggtcg-nnnnnnnnattcacgcaccctaggaatgttgggtactgctatgaacttttcgcgcggtcgtggtgaggatc |
306 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49637568 |
tccgtttttttttt-ttcatctgggtcgtttttttttattcacgcaccctaggaatgttgggtactgctatgaacttttcgcgcggtcgtggtgaggatc |
49637470 |
T |
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| Q |
307 |
ggttttataatccaccacaagctcgtagggcgttacatac |
346 |
Q |
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| T |
49637469 |
ggttttataatccaccacaagctcgtagggcgttacatac |
49637430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 53435098 - 53435008
Alignment:
| Q |
120 |
agatcctcttctttcccatcgaattttccaatattttcaacaccgttgaccacactcgaggtttatccaaatacccatttcataaagttcc |
210 |
Q |
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| T |
53435098 |
agatcctcttctttcttatcgaattttctattaatctcaacatcgttgaccacactcgaggtttatccaaatacccatttcataaagttcc |
53435008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 346
Target Start/End: Complemental strand, 53434979 - 53434879
Alignment:
| Q |
244 |
attcacgcaccctaggaatgttgggtactgctatgaacttttcgcgcggtcgtggtgaggatcggttttataatccaccacaagctcgtagggcgttaca |
343 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| | ||| | ||||||||||| |||||||||||||| ||| |||| ||| ||||||| |
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| T |
53434979 |
attcacgcaccctagga-tgttgggtactgctatgaacttt-catgcgattgtggtgaggataaattttataatccacctcaaactcgcaggacgttaca |
53434882 |
T |
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| Q |
344 |
tac |
346 |
Q |
| |
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||| |
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| T |
53434881 |
tac |
53434879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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