View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_24 (Length: 354)
Name: NF14115_low_24
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 36465012 - 36465339
Alignment:
| Q |
9 |
ccacctttctcattttgttcttcatgccatattcttgattgttctgatgctaatgtgttttgtatgttgtctatttattatcattcatttggcatgcttt |
108 |
Q |
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| T |
36465012 |
ccacatttctcattttgttcttcatgccatattcttgattgttctgatgctaatgtgttttgtatgttgtctatttat---cattcattttgcatgcttt |
36465108 |
T |
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| Q |
109 |
caacttgctgtgcaaaaccaattgtggcatgaacctttgaaattaaaggttttatccgaagagtttaatttatttgcctcaagttttgaggttttatcaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36465109 |
caacttgctgtgcaaaaccaattgtggcatgaacctttgaaattaaaggttttatccaaagagtttaatttatttgcctcaagttt-gaggttttatcaa |
36465207 |
T |
|
| Q |
209 |
tgcttttcattttcagttctaaaaatatatttcatatatgtctttgtgtatatgtaaaaccaggctaattagttctttaattggcttatgtatatatttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36465208 |
tgcttttcattttcagttctaaaaatatatttcatatatgtctttgtgtatatgtaaaaccatgctaattagttctttaattggcttatgtatatatttg |
36465307 |
T |
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| Q |
309 |
tatttgcagcaagttttatgtaaacgttcata |
340 |
Q |
| |
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||| |||||||||||||||||||||||||||| |
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| T |
36465308 |
tatatgcagcaagttttatgtaaacgttcata |
36465339 |
T |
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