View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_27 (Length: 331)
Name: NF14115_low_27
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 25601647 - 25601353
Alignment:
| Q |
18 |
ctttattcaaaaaatttataaaatcagacatgtcccttgtttcgactttgttaagcactgaatcagaacaaaaacaatgtaattatattgtgcaatagga |
117 |
Q |
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| T |
25601647 |
ctttattcaaattttttataaaatcagacatgtcccttgtttcgactttgttaagcactgaatcagaacaaaaacaatgtaattatattgtgcaataaga |
25601548 |
T |
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| Q |
118 |
ttgattatagagcaagattccaatcctaattaaaatctagaatgtatttttaagtatgaagtagaataataattaaaaatttaggggtaaaggaaataat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25601547 |
ttgattatagagcaagattccaatcctaattaaaatctagaatgtatttttaagtatgaagtagaataataattaaaaatttaggggtaaaggaaataat |
25601448 |
T |
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| Q |
218 |
tggaatgtgaaataccttggcgcaccagtttcttagcacatagaacttacagtctagtttcttagcacaaccgcgacccaccagtttcgttcttc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25601447 |
tggaatgtgaaataccttggcgcaccagtttcttagcacatagaacttacagtctagtttcttagcacaaccgcgacacaccagtttcgttcttc |
25601353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 25596706 - 25596646
Alignment:
| Q |
151 |
aatctagaatgtatttttaagtatgaagtagaataataattaaaaatttaggggtaaagga |
211 |
Q |
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| T |
25596706 |
aatcttgaatgtattttgaagtatgaagtaggataataattaaaaatataaggggaaagga |
25596646 |
T |
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