View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_3 (Length: 616)
Name: NF14115_low_3
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 18 - 601
Target Start/End: Original strand, 42738204 - 42738789
Alignment:
| Q |
18 |
atttttggggatcaaacacagatcccaagtggtttcaaggacatgttcgtataagtcaactaaaaatgtaagcatcaagatttcccacttgcatggggat |
117 |
Q |
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| T |
42738204 |
atttttggggatcaaacacagatcccaagtggtttcaaggacatgttcgtataagtcaactaaaaatgtaagtatcaagatttcccacttgcatggggat |
42738303 |
T |
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| Q |
118 |
tgtcaagttcagctggtttgatatttgcttcaattattcaatttaaaaaacaagataacatcgaaatgaacaagcctgttcatattggttgactcaaagt |
217 |
Q |
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| T |
42738304 |
tgtcaagttcagctggtttgatatttgcttcaattattcaatttaaaaaacaagataacatcgaaatgaacaagcctgttcatattggttgactcaaagt |
42738403 |
T |
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| Q |
218 |
tggtacgcaaaaataagtcaatagcatcatttttcaaacattatatgtgaatttgctttgggttgtcatctgtctatcaagttgactgtctcttagcaat |
317 |
Q |
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| T |
42738404 |
tggtacgcaaaaataagtcaatagcatcatttttcaaacattagatgtgaatttgctttgggttgtcatctgtctatgaagttgactgtctcttagcaat |
42738503 |
T |
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| Q |
318 |
tacatttgattgaaatatagaagtaaaatgtcaatatagcaaca--nnnnnnnnatgaatagagtatgatttgtattcatctatctatgttggtggattt |
415 |
Q |
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| T |
42738504 |
tacatttgattgaaatatagaagtaaaatgtcaatatagcaacattttttttttatgaatagagtatgatttgtatccatctatctatgttggtggattt |
42738603 |
T |
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| Q |
416 |
aatatatcttgtatttatatcttatgaataaaagaattgtttgctgttaaaagaaaatgtgaagatgacccatattatgtagttcctccatcccatagtt |
515 |
Q |
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| T |
42738604 |
aatatctcttgtatttatatcttatgaataaaagaactgtttgctgttaaaagaaaatgtgaagatgacccatattatgtagttcctccatcccatagtt |
42738703 |
T |
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| Q |
516 |
aaattactttgaccatttttatgcatgttaaacaatataaatttggtggcctagggggattttcgactacagttaaatattccctt |
601 |
Q |
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| T |
42738704 |
aaattactttgaccatttttatacatgttaaacaatatcaatttggtggcctagggggattttcgactacagttaaatattccctt |
42738789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 599
Target Start/End: Original strand, 38397972 - 38398016
Alignment:
| Q |
555 |
aatttggtggcctagggggattttcgactacagttaaatattccc |
599 |
Q |
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| T |
38397972 |
aatttggtggcctagggggattttcgaccaaagttagatattccc |
38398016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 600
Target Start/End: Original strand, 17173880 - 17173925
Alignment:
| Q |
555 |
aatttggtggcctagggggattttcgactacagttaaatattccct |
600 |
Q |
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| T |
17173880 |
aatttggtggcctagaggtattttcgactaaagttagatattccct |
17173925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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