View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_31 (Length: 262)
Name: NF14115_low_31
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 44 - 245
Target Start/End: Original strand, 43288322 - 43288520
Alignment:
| Q |
44 |
tatcacgtgtcaagaagttattgctggcttatatgtgttaattgctatagcaattagcaagtcttccaagcttcttccaacnnnnnnnnnnnnnnnggtt |
143 |
Q |
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| T |
43288322 |
tatcacgcgtcaagaagttattgctggcttatatgtgttaattgctatagcaattagcaagtcttccaagcttcttccaactttttttttttttt-ggtt |
43288420 |
T |
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| Q |
144 |
agtaacaattatgcttctaccgctttgcaaatgaaagataattttttcaattaattatatattctgcccccaaccaagcatcctccttataaccacaagt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43288421 |
agtaacaattatgcttctaccgctttgcaaatgaaagataatttt--caattaattatatattctgcccccaaccaagcatcctccttataaccacaagt |
43288518 |
T |
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