View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_36 (Length: 249)
Name: NF14115_low_36
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 1452841 - 1453050
Alignment:
| Q |
12 |
aattatactttaacaaaagaatactctaaaactcccctaaaaggggaagnnnnnnntatactcaagggccctcgttgcgagtttgtaggagagggggagg |
111 |
Q |
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| T |
1452841 |
aattgtactttaacaaaagaatactctaaaactcccctaaaaggggaagaaaaaaa-atactctagggctctagttgcgagtttgtaggagagggggagg |
1452939 |
T |
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| Q |
112 |
gaaaggaagggtttnnnnnnngaagaaggagaggtggaaagaatagagagctttggaagaggagaactttgagcggtttagttttcttcataatataaaa |
211 |
Q |
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| T |
1452940 |
ggaaggaagggtttaaaaaa--aagaaggagaagtggaaagaatagagagctttagaagagga---ctttgagcggtttagttttcttcataatataaaa |
1453034 |
T |
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| Q |
212 |
tttctctaatttagtg |
227 |
Q |
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|||||||||||||||| |
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| T |
1453035 |
tttctctaatttagtg |
1453050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 51936393 - 51936357
Alignment:
| Q |
189 |
ttagttttcttcataatataaaatttctctaatttag |
225 |
Q |
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| T |
51936393 |
ttagttttcttcataatacaaaatctctctaatttag |
51936357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 8828479 - 8828557
Alignment:
| Q |
145 |
gtggaaagaatagagagctttggaagaggagaactttgagcggtttagttttcttcataatataaaatttctctaattt |
223 |
Q |
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| T |
8828479 |
gtggaaagaatgaagagctttgagaggggagagctttgcggggtttaattttcttcataatacaaaattcctctaattt |
8828557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 19153986 - 19154064
Alignment:
| Q |
145 |
gtggaaagaatagagagctttggaagaggagaactttgagcggtttagttttcttcataatataaaatttctctaattt |
223 |
Q |
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| T |
19153986 |
gtggaaagaatggagagctttgggaggggagggctttgaggggcttagttttcttcataatacagaattcccctaattt |
19154064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 6973730 - 6973664
Alignment:
| Q |
145 |
gtggaaagaatagagagctttggaagaggagaactttgagcggtttagttttcttcataatataaaat |
212 |
Q |
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| T |
6973730 |
gtggaaagaatggagagctttgggag-ggaggactttcaggggtttaattttcttcgtaatataaaat |
6973664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 22845352 - 22845285
Alignment:
| Q |
145 |
gtggaaagaatagagagctttggaagaggagaactttgagcggtttagttttcttcataatataaaat |
212 |
Q |
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| T |
22845352 |
gtggaaagaatgaagagctttgagaggggagggctttgaggggtttagttttcttcataatacaaaat |
22845285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 31601858 - 31601895
Alignment:
| Q |
186 |
ggtttagttttcttcataatataaaatttctctaattt |
223 |
Q |
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||||||||||||||||||||||||||| ||| |||||| |
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| T |
31601858 |
ggtttagttttcttcataatataaaatctctataattt |
31601895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 37908934 - 37909003
Alignment:
| Q |
143 |
aggtggaaagaatagagagctttggaagaggagaactttgagcggtttagttttcttcataatataaaat |
212 |
Q |
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| T |
37908934 |
aggtggaaagaatcgagtgttttggcagaggagggctttggggggtttaattttcttcataatacaaaat |
37909003 |
T |
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