View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_38 (Length: 242)
Name: NF14115_low_38
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 43548973 - 43549198
Alignment:
| Q |
15 |
gaagattgtatccttccaaaagttacagatgctgtttggtcaatgcttttgtttttcagtatcactaattgctaactccaccgaaatacatggatttttc |
114 |
Q |
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| T |
43548973 |
gaagattgtatccttccaaaagttacagatgctgtttgatcgatgcttttgtttttcagtatcactaattgctaactccaccgaaatacatggatttttc |
43549072 |
T |
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| Q |
115 |
ttttagtgcagtatataaatgtacttgcnnnnnnnnnnnnnnnnccttaataaaagtaattagacaagaagaatgagaacaaggaagttgcagtagacga |
214 |
Q |
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| T |
43549073 |
ttttagtgcagtatatatatgtacttgtttttttatatttttttccttaataaaagtaattagacaagaagaatgagaacaaggaagttgcagtagacga |
43549172 |
T |
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| Q |
215 |
ctttcttccttcctcatctgcctatg |
240 |
Q |
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| T |
43549173 |
ctttcttccttcctcatctgcctatg |
43549198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 29369204 - 29369263
Alignment:
| Q |
178 |
acaagaagaatgagaacaaggaagttgcagtagacgactttcttccttcctcatctgcct |
237 |
Q |
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| T |
29369204 |
acaagaagaatgagaacaaggaagttgcagttaacgactttcttccttcctcatctgcct |
29369263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 50901422 - 50901483
Alignment:
| Q |
179 |
caagaagaatgagaacaaggaagttgcagtagacgactttctt-ccttcctcatctgcctat |
239 |
Q |
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| T |
50901422 |
caagaagaatgagaacaaggaagttgcaggaaacgactttcttcccttccttatctgcctat |
50901483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 50910266 - 50910345
Alignment:
| Q |
47 |
tgtttggtcaatgcttttgtttttcagtatcactaattgctaactccaccgaaatacatggatttttcttttagtgcagtatata |
131 |
Q |
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| T |
50910266 |
tgtttggtcgatactttggtttttccgtatcacta----ctaactc-attgaaatatatggatttttcttttagtgcagtatata |
50910345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 8799231 - 8799197
Alignment:
| Q |
174 |
ttagacaagaagaatgagaacaaggaagttgcagt |
208 |
Q |
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| T |
8799231 |
ttagacaagaagaatgagaacaaggaagtagcagt |
8799197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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