View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_40 (Length: 239)
Name: NF14115_low_40
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 743133 - 742913
Alignment:
| Q |
15 |
caaaggctgaagctgaaacgcgaagagcttatcttgtctctacaggaggctgagaggcggcatgatatagaaagagctgcaagtctacgata-------- |
106 |
Q |
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| T |
743133 |
caaaggctgaagctgaaaagcgaagagcttatcttgtctctacaggaggctgagaggcggcatgatatagaaagagctgcaagtctacgatatggtgcga |
743034 |
T |
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| Q |
107 |
---------tggaagatgcaattcagctgcttgatgagatagcactgatgagatgagagcttaatgttgacagaaac-----tgctggagtacaaaacct |
192 |
Q |
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| T |
743033 |
ttgatgacgtggaagatgcaattcagctgcttg--gagatagcact-----gatgagagcttaatgttgacagaaactgctgtgctggagtacaaaacct |
742941 |
T |
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| Q |
193 |
aattgctatggttgttagcctattgacc |
220 |
Q |
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| T |
742940 |
aattgctatggttgttagcctattgacc |
742913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 42450381 - 42450287
Alignment:
| Q |
15 |
caaaggctgaagctgaaacgcgaagagcttatcttgtctctacaggaggctgagaggcggcatgatatagaaagagctgcaagtctacgatatgg |
109 |
Q |
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| T |
42450381 |
caaaggctgaagcagaaacgtgaagagcttatcttgtctctacaggaggctgagaggcggaatgatatagcaagagctgcaagcctacgatatgg |
42450287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 45467496 - 45467573
Alignment:
| Q |
17 |
aaggctgaagctgaaacgcgaagagcttatcttgtctctacaggaggctgagaggcggcatgatatagaaagagctgc |
94 |
Q |
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||||||||||| |||||| |||||||| |||| | ||||||||||| ||||||||| ||||| ||| ||||||||| |
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| T |
45467496 |
aaggctgaagcagaaacgtgaagagctcctctttgcactacaggaggcagagaggcggtatgatctagcaagagctgc |
45467573 |
T |
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